 |
Information for unigene UN10490
| FASTA Sequence |
| Unigene ID: UN10490 | Length: 1709 |
| SNP | GAGTCATCCCTCGTCGCTTCAAATCTACCAAGAGAAGCTTTTGGAATCTGGACAGGTAACCAAAGAAGATATTGATAAGATTCAAA
AGAAAGTAAGCTCTATCCTCAATGAAGAATTTGAGGCAAGTAAAGAGTATATTCCACAAAAACGTGACTGGCTGGCAAGTCATTGG
ACTGGATTCAAGTCACCGGAGCAGATTTCTAGGATCCGTAACACTGGTGTGAAGCCAGAGATTTTGAAGAATGTGGGGAAAGCAAT
CTCAACCTTTCCAGAGAACTTCAAGCCACACAGAGGAGTGAAAAGAGTTTATGAACAGCGTGCTCAGATGATTGAGTCAGGAGAAG
GGATTGACTGGGGACTTGGAGAAGCTCTTGCTTTTGCTACACTAGTTGTGGAAGGCAACCATGTTCGGCTAAGTGGTCAAGATGTT
GAAAGAGGGACTTTCAGTCATAGACACTCAGTGCTTCATGATCAAGAAACCGGCGAGGAGTATTGTCCCTTAGACCACCTGACCAT
GAACCAAGACCCTGAAATGTTCACTGTCAGCAACAGCTCTCTTTCAGAGTTTGGTGTTCTGGGATTCGAACTGGGTTACTCTATGG
AGAACCCGAATTCTCTGGTAATATGGGAGGCTCAGTTTGGAGACTTTGCCAATGGCGCACAAGTGATGTTTGATCAGTTCATTAGC
AGTGGAGAAGCCAAATGGCTCCGTCAAACCGGGCTAGTAGTTCTGCTTCCTCATGGATATGATGGACAGGGTCCTGAACATTCCAG
TGGAAGATTAGAACGTTTCCTTCAGATGAGTGATGACAATCCTTTTGTCATCCCTGAGATGGATTCAACTCTTAGAAAGCAGATTC
AAGAGTGTAATTGGCAAATTGTTAATGTTACTACACCTGCAAACTACTTCCACGTTCTGCGTCGCCAGATACACAGGGATTTCCGC
AAGCCTCTTATAGTGATGGCTCCTAAAAACTTGCTTCGACACAAGAAGTGTGTATCTAACCTCTCGGAGTTCGATGATGTTAAAGG
ACATCCTGGTTTTGACAAGCAAGGAACCAGGTTTAAACGGTTGATTAAAGATCAAAGTGGTCACTCGGATCTTGAAGAAGGTATCC
GACGTCTAGTCCTCTGCTCTGGGAAGGTTTACTATGAGCTTGACGAAGAGCGACAAAAGTCTGGAACAAACGACATAGCCATCTGC
AGAGTAGAACAGCTTTGTCCATTCCCTTACGATCTCATTCAGAGAGAACTAAAGCGATATCCAAATGCAGAGATAGTGTGGTGTCA
AGAAGAGCCGATGAACATGGGAGGATATCAGTATATAGCACCAAGGCTTTGCACGGCCATGAAAGCACTGAACAGAGGAAGCTTCA
GCGACATCAAATACGTTGGGCGTCTTCCTTCAGCTGCTACAGCCACTGGTTTTTACCAGCTTCATGTTAAGGAGCAAACCGATCTT
GTTCACAAAGCTCTTCAACCTGACCCCATCACCCCTATCCTCCCTTAAATGGCCCATTAAGGATATATATAAATAACAGCTTCAGC
TCTTGAAGCCCATAAGAGTCTTCTCTGAGAAAAAGAACATGTTTGCTTGAGAGTTTCATTTCAATTTGGTTTGAATGTTTCTGGTT
TAGTTCGGTTATCAATAAAAATGATGTAATCAAACATAAAATGATGTAAACGATCATAAATACTTTCTTCGTTTC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002864978 E1 subunit of 2-oxoglutarate dehydrogenase [Arabidopsis lyrata subsp. lyrata] | 2582 | 2e-289 |
| NP_201376 2-oxoglutarate dehydrogenase, E1 component [Arabidopsis thaliana] | 2572 | 3e-288 |
| BAF01922 2-oxoglutarate dehydrogenase, E1 component [Arabidopsis thaliana] | 2572 | 3e-288 |
| XP_002528465 2-oxoglutarate dehydrogenase, putative [Ricinus communis] | 2339 | 3e-261 |
| XP_002312072 predicted protein [Populus trichocarpa] | 2338 | 4e-261 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54JE4 2-oxoglutarate dehydrogenase, mitochondrial | 1242 | 2e-135 |
| Q60HE2 2-oxoglutarate dehydrogenase, mitochondrial | 1119 | 4e-121 |
| Q02218 2-oxoglutarate dehydrogenase, mitochondrial | 1118 | 5e-121 |
| Q5RCB8 2-oxoglutarate dehydrogenase, mitochondrial | 1113 | 2e-120 |
| Q60597 2-oxoglutarate dehydrogenase, mitochondrial | 1105 | 2e-119 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WLT5 2-oxoglutarate dehydrogenase, E1 component (Fragment) | 2572 | 2e-288 |
| Q9FLH2 2-oxoglutarate dehydrogenase, E1 component | 2572 | 2e-288 |
| Q9ZRQ2 2-oxoglutarate dehydrogenase, E1 subunit | 2547 | 2e-285 |
| B9SR46 2-oxoglutarate dehydrogenase, putative | 2339 | 2e-261 |
| B9HM58 Predicted protein | 2338 | 3e-261 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G65750.1 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative | 2573 | 8e-291 |
| AT3G55410.1 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative | 2296 | 1e-258 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
