RadishBase

| | | |

Information for unigene UN10535

FASTA Sequence

Unigene ID: UN10535	Length: 1035		SNP
GGACTACATGAAAGCTACTCTCCTCCATCATCTCGAGCTTACTGTATATAAAAAGCCTCTCAAAACCCTTTCCCTGGATTCATTTT ATTCACCAAAGAAAAAACTAATAGAAACTTAACTAGACGACAAGAAATACATTTCTTGATTTCTTGGTAAATGGCGTCTTCAAATA CTCTGGCGATATCTCCGAGGAAGCTCCGTTCAGACCTTTATTCATACTCTTACCAAGACGGTTCTAGCACACCACTCGTGATCTCT GTTCTCTCGTCTCTGATTGAACGGACGTTGGCTCGGAACGAGAGGATCAGCCGGAGCTATGGTGGTTTTGGAAAGACACGTGTCTT CGACTGCCTAGAGATTCCTGACATGACGATCCAATCGTATTTAGAGAGGATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTATG TCGTGGCTTATGTCTACATTGACCGGTTCTGTCAGAATAATCAAGGTTTCAGAATCAGTCTCACTAATGTACATCGTCTCCTCATC ACAACCATCATGGTCGCTTCCAAATACGTCGAAGACATGAACTACAGAAACTCGTACTTTGCGAAAGTAGGAGGATTAGAGACAGA AGATTTAAACAACTTGGAACTGGAGTTCTTGTTCTTGATGGGGTTTAAGTTGCATGTGAATGTGAGCGTGTTCGAGAGTTACTGTT GTCATCTTGAGAGAGAAGTAAGTATAGGAGGAGGTTATCAGATCGAGAAGGCATTGCGTTGCGCTGAGGAAATCAAATCCAGACAA ATTGTTCAAGATCCTAAACACCATAATCAATTTTCAAGAATCTTGTTGTAGTCAAAAACTCTGTTTTGTTTTGTCGGTTTGCTTTT GAGGGTGTTTGACTTTTTGATTACCTTGTGTCCTTGTCGGTTGGGTTTTTCTTGAAATGTAAATAGAGAGAAAATATAGAGACTGG TGTTGTATGTATCTATGTATTAGCAAATGTAGATTCTTCTATCATTCTGTGTACCTGTTGAGGTTTAAGGAAATGGTTTTCTCATA TAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002880155 CYCP3_1 [Arabidopsis lyrata subsp. lyrata]	1064	1e-113
NP_182034 cyclin-U2-1 [Arabidopsis thaliana]	1060	3e-113
XP_002876566 CYCP3_2 [Arabidopsis lyrata subsp. lyrata]	993	2e-105
NP_191614 cyclin-U2-2 [Arabidopsis thaliana]	978	1e-103
XP_002301262 predicted protein [Populus trichocarpa]	864	2e-090

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SHD3 Cyclin-U2-1	1060	1e-114
Q9M205 Cyclin-U2-2	978	4e-105
Q7FAT5 Cyclin-P2-1	486	5e-048
Q9LJ45 Cyclin-U1-1	407	7e-039
Q9LY16 Cyclin-U4-2	379	1e-035

TrEMBL top hits (Blast detail)	Score	e value
B9GPB8 Predicted protein	864	1e-090
B9RD59 Nuc-1 negative regulatory protein preg, putative	863	2e-090
B9IBW7 Predicted protein	851	4e-089
C6SVH3 Putative uncharacterized protein (Fragment)	827	2e-086
B7FJB0 Putative uncharacterized protein	815	6e-085

Arabidopsis top hits (Blast detail)	Score	e value
AT2G45080.1 cycp3;1 (cyclin p3;1); cyclin-dependent protein kinase	1061	9e-116
AT3G60550.1 CYCP3;2 (cyclin p3;2); cyclin-dependent protein kinase	979	3e-106
AT3G21870.1 CYCP2;1 (cyclin p2;1); cyclin-dependent protein kinase	407	6e-040
AT5G07450.1 CYCP4;3 (cyclin p4;3); cyclin-dependent protein kinase	379	1e-036
AT2G44740.1 CYCP4;1 (cyclin p4;1); cyclin-dependent protein kinase	378	1e-036

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	5			36%


9	3			21%


12	2			14%


8	2			14%


10	2			14%

Unigene Members	Member information