Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN10605

FASTA Sequence
Unigene ID: UN10605Length: 1227  SNP
ACGTACGTTGATTTCTTCGGTTCTCTCTAATCGTACAACCAAAATCAGGTCGAAGAATCAGGGTTTTCAGGACAAAACCGAGTTTC
GCTCTCCGTCTTCTATCAAGAATATGCAAGAAGCAGCGTTAGGTATGATCGTAGGCGGAGGAGGAGAAGGAGACGCAGCCGTGGCG
GCGGAGCAGAATAGACAAATGAAAGGTGAGATAGCTACACATCCCATGTACGAGCAGCTTTTGGCCGCACACGTGGCATGTCTGAG
AGTGGCGACTCCCATCGACCAGCTTCCGATCATTGAAGCTCAGCTTTCTCACTCTCATCATCTTCTCCGATCTTATGCTTCGACAG
CCGTTGGATTCTCGCATCATGATCGTCAAGAGCTCGACAATTTCTTGGCACAATATGTAATGGTGTTGTGTAGCTTCAAAGAACAG
CTTCAACAACACGTGAGGGTTCATGCCGTCGAAGCTGTGATGGCTTGCCGTGAAATTGAGAACAACCTCCACTCTCTCACAGGAGC
GACATTAGGAGAAGGGTCCGGTGCGACGATGTCCGAGGATGAGGACGATCTTCATATGGATTTCTTATCTGATAATTCCGGCATTG
ATTTTAGCGGGGGACAAGATATGACGGGATTTGGTCCATTGCTTCCGACTGAATCTGAAAGATCTCTTATGGAAAGAGTCAGACAA
GAGCTGAAACTCGAACTCAAACAGGGTTTTAAATCAAGAATTGAAGATGTAAGAGAAGAGATAATGAGGAAAAGAAGGGCTGGGAA
ATTGCCTGGAGACACAACAACTGTCTTGAAAAATTGGTGGCAACAACATTGCAAATGGCCTTACCCTACTGAAGACGACAAGGCAA
AATTGGTGGAGGAGACAGGATTACAGTTGAAGCAAATCAACAACTGGTTCATTAATCAACGCAAGAGGAACTGGCACAATAACTCT
CATTCCCTCACTTCCTTGAAGTCCAAGCGCAAACACTGATCTCTTATTACTGGTATACAATTGCCACTACATTTACATATGCTACT
TACATTCCGCAGTATATAATTCCATTGATCTAGTAATAACGAGGTGTGATTATGAATATCATGTACTTAGCTTATTTTACATCCCA
ACCACTAAAAGGTTTGTTCTTTAAGTGATTTACTTGTTGTTATTGGATTGTGATTCAATACGTGTATGTTTTACTTTTTACTGCGA
TTCATCACAACAACTTTCACTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
P46606 RecName: Full=Homeobox protein HD114852e-162
NP_564805 homeobox protein knotted-1-like 7 [Arabidopsis thaliana]14252e-155
XP_002887986 hypothetical protein ARALYDRAFT_475053 [Arabidopsis lyrata subsp. lyrata]14207e-155
AAM67281 homeodomain-containing protein HD1, putative [Arabidopsis thaliana]14045e-153
BAC42940 putative homeodomain transcription factor KNAT6 [Arabidopsis thaliana]14037e-153

Swiss-Prot top hits (Blast detail)Scoree value
P46606 Homeobox protein HD114859e-164
Q9FPQ8 Homeobox protein knotted-1-like 714258e-157
Q94LW3 Homeobox protein knotted-1-like 310413e-112
P48000 Homeobox protein knotted-1-like 39633e-103
O04136 Homeobox protein knotted-1-like 39518e-102

TrEMBL top hits (Blast detail)Scoree value
B9RC00 Homeobox protein knotted-1, putative12091e-130
A5Y4G9 Class II KNOX homeobox transcription factor11786e-127
A9P848 Putative uncharacterized protein11705e-126
B9GKQ8 Predicted protein11688e-126
C6TBT2 Putative uncharacterized protein11321e-121

Arabidopsis top hits (Blast detail)Scoree value
AT1G62990.1 KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7); DNA binding / transcription activator/ transcription factor14266e-158
AT5G25220.2 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription activator/ transcription factor9642e-104
AT5G25220.1 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription activator/ transcription factor9633e-104
AT5G11060.1 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4); transcription activator/ transcription factor9346e-101
AT4G32040.1 KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription activator/ transcription factor8773e-094

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
96  40%
 
102  13%
 
63  20%
 
81  7%
 
122  13%
 
71  7%

Unigene MembersMember information