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Information for unigene UN13101
| FASTA Sequence |
| Unigene ID: UN13101 | Length: 1621 |
| SNP | GGGGGGCCGAGTAAAATTTCGAAAATTACAACAGTAAATCGATCTGGTCCCTTAATTTAGGATCTTCTTCTCTGAATCTCACGACG
CCTAGGTCGATCGTTGAGCTCTGTTTTCTGATATCGAATCGAGAAAGAAGGCAGCAAGCAATGGGGAGCTTGGGGACGTTGCTGAG
GTATCCAGATGACGTATATCCGCTGCTGAAGATGAAACGAGCCATCGAGGAAGCGGAGAAGCAGATCCCTCCCGAGCCACACTGGG
GTTTCTGCTATTCAATGCTCCACAAGGTCTCTCGTAGCTTCTCTCTCGTTATCCAGCAACTTGGTACCGATCTTCGTAACGCTGTG
TGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACAGTAGAGGATGACACAAGCATACCAACTGATGAAAAGCTGCCCATCTTGAT
AGCGTTCCACCGTCACATCTACGATACTGACTGGCACTATTCATGTGGTACGAAGGAGTACAAGGTTCTGATGGACCAATTTCACC
ATGTTGCTGCAGCTTTTCTTGAACTTGAAAAAGGGTATCAAGAGGCTATCGAGGAAATTACTAAAAGAATGGGTGCAGGAATGGCC
AAGTTTATTTGCCAAGAGGTAGAAACTGTTGATGACTACGATGAGTACTGCCACTATGTTGCTGGACTTGTGGGTTTAGGTCTGTC
GAAACTCTTCCTAGCTTCGGGAACAGAAGCTTTGTTGCCAGACTGGGAGCGGATTTCCAATTCAATGGGTTTATTTCTTCAGAAAA
CAAACATTATCAGAGATTATCTTGAAGACATTAATGAAATACCAAAGTCTCGCATGTTTTGGCCTCGCAAGATTTGGGGCAAGTAT
GCTGACAAGCTAGAGGACTTAAAATACGAGGAGAATTCAACTAAAGCAGTGCATTGCTTGAATGAAATGGTCACCAATGCATTGAC
GCATATTGAAGATTGCCTGAAGTACATGGCTGTGTTGCGTGATCCTTCTATATTTCGGTTCTGTGCTATCCCTCAGATCATGGCGA
TTGGAACACTTGCATTGTGCTATAACAATGTACAAGTATTTAGAGGCGTGGTGAAACTGAGGCGAGGTCTAACTGCCAAAGTCATT
GATCGCACAAAGACAATGGAAGATGTCTATGGAGCTTTCTATGATTTTGCTTCCATGCTAAAAACAAAGGTCGACAAGAACGATCC
GAATGCCAGTACGACGTTAAACCGACTTGAAGCCGTTCATAAAGTCTGCAGAGACACTGGAGTCCTTCATAACAGAAAATCTTATA
TTAATGACAAAGGACAATCTGCCAATGTCTATATTGTAATGCTTGTGATTCTACTGGCCATAGTCTTTGCATATCTCAGAGCAAAC
TGAGTGATCAATGATGGACAGTGTGATTCGTAGGTTCATTCTTATTCACGTCACTCTCTTTTTCTTAGAACTGAAGTCCTATTCAA
GATTGTTTCCAGAACAAGAAAGTTTTAAACCTGGCTTGGTCTCTACCCATGTAGTTTGAATAATTATATACCTTTCTTAAATGTAC
CTCTTGTTTATGCTGACGTCAAATATATATTGCCAATGATTTTTGGTTTTCATGAATTCAAATTAAATTTCAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002869133 hypothetical protein ARALYDRAFT_912921 [Arabidopsis lyrata subsp. lyrata] | 2006 | 1e-222 |
| NP_195190 Squalene synthase [Arabidopsis thaliana] | 1991 | 7e-221 |
| BAA22559 squalene synthase [Glycine max] | 1756 | 1e-193 |
| AAB61927 squalene synthase 2 [Arabidopsis thaliana] | 1756 | 1e-193 |
| ACU21003 unknown [Glycine max] | 1752 | 3e-193 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P53799 Squalene synthase | 1991 | 3e-222 |
| P53800 Squalene synthase | 1624 | 1e-179 |
| Q02769 Squalene synthase | 836 | 2e-088 |
| Q54DR1 Squalene synthase | 832 | 7e-088 |
| P53798 Squalene synthase | 832 | 7e-088 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22107 Squalene synthase | 1756 | 8e-194 |
| O23118 Squalene synthase 2 | 1756 | 8e-194 |
| C6TGQ1 Putative uncharacterized protein | 1752 | 2e-193 |
| O65688 Putative squalene synthase | 1747 | 9e-193 |
| B9RHC3 Farnesyl-diphosphate farnesyltransferase, putative | 1736 | 2e-191 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G34640.1 SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase | 1992 | 2e-223 |
| AT4G34650.1 SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase | 1747 | 5e-195 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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