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Information for unigene UN13384
| FASTA Sequence |
| Unigene ID: UN13384 | Length: 1238 |
| SNP | GGAATGATGAGAGGGAGCAGACGATTAATCAGCTCTTGACTGAGATGGATGGGTTCTCTGGTAACTCTGGTGTGATTGTGTTGGCT
GCTACGAATAGACCTGATGTGTTGGACTCTGCGTTGTTGAGGCCTGGGAGGTTTGATAGGCAGGTGACGGTTGATAGGCCTGATGT
TGCTGGCAGAGTCAAGATTCTTCAGGTTCATTCTAGAGGGAAGGCGATTGGTAAAGATGTGGACTTTGATAAGGTTGCGAGGAGGA
CTCCGGGTTTCACCGGTGCTGACTTGCAGAACCTGATGAATGAAGCGGCGATTCTTGCGGCGAGGCGTGAGCTTAAGGAGATAAGC
AAGGATGAGATCTCTGATGCGCTTGAGAGGATCATTGCTGGACCTGAGAAGAAGAATGCTGTTGTCTCTGATGAGAAGAAGAGGCT
TGTTGCTTACCATGAGGCTGGTCATGCTCTAGTGGGTGCTCTTATGCCAGAGTATGATCCTGTTGCCAAGATTTCCATCATTCCTC
GTGGCCAAGCTGGTGGGCTTACCTTTTTTGCCCCCAGTGAAGAAAGACTCGAGTCTGGATTGTACAGTAGAAGCTACCTCGAGAAT
CAGATGGCTGTTGCACTTGGTGGAAGGGTTGCAGAGGAGGTGATCTTTGGGGATGACAACGTGACGACTGGAGCATCAAATGATTT
CATGCAGGTGTCTCGTGTGGCACGTCAAATGATCGAGAGGTTCGGGTTCAGCAAAAAGATTGGACAAGTAGCCGTTGGTGGCCCTG
GTGGAAATCCCTTCATGGGTCAACAAATGTCTTCACAGAAAGATTACTCAATGGCAACTGCTGATATCGTAGATGCTGAGGTGAGA
GAGCTGGTGGAGAAGGCGTACAAGAGAGCCACAGACATCATAACAACTCACATTGATATCTTGCACAAGCTTGCGCAGCTCTTGAT
CGAGAAAGAAACTGTTGATGGAGAAGAGTTCATGAGTCTCTTTATTGACGGCCAAGCTGAGTTGTATGTTTCTTAGTTTATATCAA
AATATTCCAAAGTTGACATTTGCTTTTTAAATACCATTAGCTGTTAATGTATACTACTAGACCATTACCCATTTGCGTATATATTT
TCTTTTGTAAAATACTCTGTTTCTACTTGGACTGAATCCTTATGAACCATCATACTTAGTAAGGTAGAGAAAGGCAGTATCTTAAC
AACTTACAAACTGTTATACAAATGAGTTGTGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894238 hypothetical protein ARALYDRAFT_891950 [Arabidopsis lyrata subsp. lyrata] | 1682 | 3e-185 |
| NP_564563 cell division protease ftsH-1 [Arabidopsis thaliana] | 1678 | 9e-185 |
| CAA68141 chloroplast FtsH protease [Arabidopsis thaliana] | 1640 | 2e-180 |
| NP_001183829 hypothetical protein LOC100502422 [Zea mays] | 1635 | 9e-180 |
| XP_002865544 hypothetical protein ARALYDRAFT_494803 [Arabidopsis lyrata subsp. lyrata] | 1635 | 9e-180 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q39102 Cell division protease ftsH homolog 1, chloroplastic | 1678 | 4e-186 |
| Q9FH02 Cell division protease ftsH homolog 5, chloroplastic | 1627 | 3e-180 |
| Q5Z974 Cell division protease ftsH homolog 1, chloroplastic | 1624 | 7e-180 |
| O82150 Cell division protease ftsH homolog, chloroplastic | 1618 | 3e-179 |
| Q9BAE0 Cell division protease ftsH homolog, chloroplastic | 1604 | 1e-177 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C4JB77 Putative uncharacterized protein | 1635 | 6e-180 |
| B8B2K6 Putative uncharacterized protein | 1627 | 5e-179 |
| B9DHL9 AT5G42270 protein (Fragment) | 1627 | 5e-179 |
| B9GQ31 Precursor of protein cell division protease ftsh-like protein | 1626 | 7e-179 |
| B7EAD1 cDNA clone:J013001F19, full insert sequence | 1624 | 1e-178 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G50250.1 FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase | 1679 | 3e-187 |
| AT5G42270.1 VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase | 1628 | 2e-181 |
| AT2G30950.1 VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding | 802 | 1e-085 |
| AT1G06430.1 FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding | 791 | 2e-084 |
| AT5G15250.1 FTSH6 (FTSH PROTEASE 6); ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding | 789 | 4e-084 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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