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Information for unigene UN13505

FASTA Sequence
Unigene ID: UN13505Length: 1369  SNP
GCGTCAGAATCTTTCATCTTTAAACACACACAAACGCCATAATGTGACACGCATAGAAAATTGAAACTGTTAAAACCCATTAACGG
GCAAGTAGTAAACAAAGAGTAACTACGATGCAATAAGGAACGGTTTACAAGAACAAACGCATAAGATAAGTACCCACACAAGTAGT
AGAAGGGAAGCAAAGCAAATCAATCATCAGCTCCATCAGTCTTTCCAGCACCAAAAGGGTCATGATTCGGACCCAACTCTTCTCCC
ATATGGCGCTGCACAAGCCTCGAAAGATCAGCCATAACCTTAGCCTCGCGCTTAGCCTTCTCCTCGTAGTTAAACATGGCCAACGC
CCGCTTGTCTTCAGCACTGTAAACCTGGTTCTCCTTCCTGATACGAATAGCATTCATCCTCTGATGCCTACTCCCACTCATCACAT
ACCCAAGATCCTCAAACCTCTGGATCTCATCAGCGTTAAGACCCACTTCTCCTCTACGTGGGATACGCTTCCCTTGCTGCACGTAC
TGCGCTATAGCGTCTCCTTCACCGGGTCTTAAAGCACCTCCGTAGCTGATGTGTCCTTCGGCTTTAGGTAACGGCATTGGACCCAC
CTCAGCTTCCTCTTCATCTTCAGCTGCTGCAGAAGCTTTCTTCTTTGATTCAATCATCTCCTTGAACTTCTTCATCTCCTCTTCAT
CAAGCTCAGGCTCCTTCACCGCTTCTTCTACATCAATGTTCTTCCCCTTTGATTTGCTACGTTCTTCCCCAGAAGAACTAATCTCA
GATTCTTCATCACTGCTCTCATCAGAATCACTGTACCTCCTCTTCCTCCTATGACCTCTCCTCTTCCTACTACTTCTGCTTTTCTT
CTTCTTATTCCTTCTTCTACGCCTCCTATCTTCCTCATCCGAATCATCATCACTCTCGCTCTCCTCTTCCGATTCGCTATCACTCC
TTCTCCTACGCTTACTCCTAGAGCTCTTACTCTTTCTCTTCTTCCTAGATCTATCGGATTCAGATCCCGACTTACCAGATTCAGAT
TCGCCTTTCCGTTTCGGATCATCCACATCCTTTTCCGGAACCTCGTCGTCGTCCGCGGCGTTTTCATCGGACTCTTCCTCGTTGGG
ATCTCTGGGCGGACTCGGCGTGTTCTCCCAGATGCAGTACTTGCCAGATTTCCTCATCTTGAGGCGTTTGAGCCTCCGGTACTCCT
CGTGACTCAATCCTTTCAACTCTTCGTCGGAATCTGAGTCGGACCTCCTCCCTCTGCGATGATCACGATCCAGGTATCCTTGATTC
TTCCCAAATCGCCTTGGAAGCGAGTTCATCGTCATCATCAATCCCTAAAGTTCAATCCTAACAACAACGACGACGACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002307591 predicted protein [Populus trichocarpa]10013e-106
AAC78251 predicted protein of unknown function [Arabidopsis thaliana]9181e-096
NP_192181 uncharacterized protein [Arabidopsis thaliana]9181e-096
XP_002872821 hypothetical protein ARALYDRAFT_490285 [Arabidopsis lyrata subsp. lyrata]9092e-095
XP_002460328 hypothetical protein SORBIDRAFT_02g026540 [Sorghum bicolor]8293e-086

Swiss-Prot top hits (Blast detail)Scoree value
Q55ED4 UPF0396 protein5046e-050
Q9D0F4 NF-kappa-B-activating protein5002e-049
Q4V7C9 NF-kappa-B-activating protein4965e-049
Q9VB74 UPF0396 protein CG60664761e-046
Q4P4G8 UPF0396 protein UM049954633e-045

TrEMBL top hits (Blast detail)Scoree value
B9H897 Predicted protein10012e-106
O22758 Putative uncharacterized protein AT4g027209181e-096
Q8S9I4 AT4g02720/T10P11_19181e-096
C5X2A5 Putative uncharacterized protein Sb02g0265408292e-086
B4F9V3 Putative uncharacterized protein8212e-085

Arabidopsis top hits (Blast detail)Scoree value
AT4G02720.1 unknown protein9194e-099
AT5G53800.1 unknown protein2081e-016
AT5G49400.1 zinc knuckle (CCHC-type) family protein1821e-013
AT2G18540.1 cupin family protein1722e-012
AT3G49601.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 58354 Blast hits to 32469 proteins in 1203 species: Archae - 56; Bacteria - 5471; Metazoa - 26539; Fungi - 6511; Plants - 2874; Viruses - 282; Other Eukaryotes - 16621 (source: NCBI BLink).1703e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  20%
 
201  10%
 
113  30%
 
82  20%
 
191  10%
 
211  10%

Unigene MembersMember information