RadishBase

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Information for unigene UN13533

FASTA Sequence

Unigene ID: UN13533	Length: 1848		SNP
GGGATGATGGCTCAGGCCTCTCAAGGTGATCTATCCGTAGGCTTGTTGTCATGGGCACACAACTTGTTACCTGTAGTTGGTAATAA GAACTGCAACCCTCAGTCAAGAGATCTCATCCTGCAGTTAGTTGAGAAAATATTGTCTAATCCAAAGGCTAGGACCATACTTTTAA ACGGAGCTGTTAGGAAGGGAGAGCGTTTGATTCCACCTCCCATGTTTGAGATCTTGGTGCGGGTTACATTCCCTGCCTCATCCGCA AGAGTGAAGGCTACAGAGAGGTTTGAGGCAGTGTATCCTTTGCTCAAGGAAGTGGCTCTTGCTGGTGCACCAGGAAGCAAGGCCAT GAAACAAGTCACACAACATATATTCACTTTTGCTCTGAGATTAGCTGGAGAAGGGAACCCTGTCCTAGCCAAGGAGGCTACAGCGA TCGCTATATGGGCCGTGACTGAAAACGTGGACTGCTGCAAGCACTGGGACAATCTCTACAAGGAGAATCTAGAAGCTAGTGTTGCT GTTCTCAAAAGGCTTGTAGATGAATGGAAGGACCATTCTGTCAAGCTATCATCATCACCGAGTGATACCGCCATTCTCAACCGAAC TATGAAGAGCTTCAGGCTAAAGAACGAGGAAGCCATCACTGAAGGAAGAGCCAATGGTTCTCTCTACAAGGAAGCTGACAAGTCAT GCAAAGTGATATCAGGGAGACTCTCCCGTGGAAGTGGCTGCCTCAAAGGAACAGCCATCACTGTTATGGTTCTAGCTGCAGCTGCT GCTGTTCTATCTTCCAACCCTGAGGTTACAACTGAGCTGAAGAACCTGGTGGACTCATTGGAGCTGCACCAGTACTATAATCCAAT CATCACAGCTTTGAAGAACTAAGAGAGAAGAGAGACAAAACAAGCTGAGGACGATAAGTTAATCGTCGGTGTGAGAATTTACTTAA AGTTAAAATCCTTTTACTTCTAAGATACAAAGTTTTGAAAAAAATTTGACAATGAGAATAAAGTTATTTCTGTTTATTATATTTTG AGTTTCACAATCATATAGTTGTTAAATGCGTAGGCGAACATTGGTTGTTCATGTCCAAATATAAACGAGTCTATATTGAACATAGA GCCTTAAAAACTGAGTATAAGAAAAGAGCCTGCACATTGAGTGAGTCCAGAGTATATACAGTGACAAGATATGTAAGGAACTTTTA GTAGTCGTAGTCTTCTGGCTGTGCAAATGGGTACTTGAGGTAACCGTTCTTGATAGTGGAAGGGTCTTTTGGTTTGTCCCAAGGAT ACTTCATATTTGGATCTCTTGGGAACTTTCTGAAGTTGAGAAATGGTGCCCATAACAGTAGCCCGGGGAAGAACATGAAGACGAAC ATGAACTGTAAATACATCTCGAAGAACTTCCTTCTGTACCATCTTACTCTCAGCCAGTTCATTATGATTGGTGGCATTACTAGGAA GTAGAAAACAGATATGATACCGATGTCGAGCACCACGCTGCCCAGTTCCTGCTCGTGGTTGACTCCAGTTATAGCCAACGCCGGAT GATCAATCATGGCAAGAACTGTCCCTAGTTGAGCTGCAAAGATTGTCTTCTTTGCTCCAAAGATATCACCAGCCTTTGCTCTCATC TTGGCAACATTTTGAAGAAGTGAATCGGTGTTAGAGATGGGTTTTGTGTGAGATGTAATACAGAAAGGAGCTTTGACGCTGCGAGG CCTTGGAGAAAGAGGGGTCAAAGCATTCGGGACACAGAGCCCAAGATAGCAGCAACGGCTCATCTCTCTCTCTGTTTCTGTCTTGT GAAGTTTCCTTATCTGTTGAGATTGGTTCTAGTGGCAGAGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002888794 hypothetical protein ARALYDRAFT_476207 [Arabidopsis lyrata subsp. lyrata]	1293	7e-140
NP_177234 uncharacterized protein [Arabidopsis thaliana]	1289	2e-139
XP_002886328 hypothetical protein ARALYDRAFT_892928 [Arabidopsis lyrata subsp. lyrata]	1151	2e-123
NP_173730 uncharacterized protein [Arabidopsis thaliana]	1086	7e-116
NP_001185070 uncharacterized protein [Arabidopsis thaliana]	1086	7e-116

Swiss-Prot top hits (Blast detail)	Score	e value
Q8DKZ3 NAD(P)H-quinone oxidoreductase subunit L	149	1e-008
Q10W93 NAD(P)H-quinone oxidoreductase subunit L	139	2e-007
Q7V2B1 NAD(P)H-quinone oxidoreductase subunit L	138	2e-007
B1WNP9 NAD(P)H-quinone oxidoreductase subunit L	136	4e-007
Q7U620 NAD(P)H-quinone oxidoreductase subunit L	136	4e-007

TrEMBL top hits (Blast detail)	Score	e value
Q9S791 AT1G70770 protein	1289	1e-139
Q3ED67 Putative uncharacterized protein At1g23170.1	1086	5e-116
B6SJY7 Putative uncharacterized protein	929	7e-098
B9HW47 Predicted protein	843	7e-088
B9HJD3 Predicted protein	841	1e-087

Arabidopsis top hits (Blast detail)	Score	e value
AT1G70770.1 unknown protein	1294	2e-142
AT1G23170.1 unknown protein	1087	2e-118
AT3G11880.1 unknown protein	852	3e-091
AT1G70760.1 CRR23 ((chlororespiratory reduction 23)	832	7e-089

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	5			11%


10	4			9%


20	1			2%


9	15			33%


11	8			18%


12	4			9%


8	8			18%

Unigene Members	Member information