RadishBase

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Information for unigene UN13659

FASTA Sequence

Unigene ID: UN13659	Length: 1078		SNP
GGGCTTCTCTTTGATATAAAAACGCATAGTAAGCCGAAAGTTGCCGGGCCGCCACTGAGGAAGAAGAAGGAGAGTCGTCGTCTGCT CCGAAACAACAGCTGCAAACATGGCAAGGGGATTGAAGAAGCATCTGAAGAGGCTCAATGCCCCCCATCATTGGGGTCTTGACAAA CTTGGTGGTGCCTTCGCTCCCAAGCCGTCTTCTGGACCTCACAAGTCTAGGGAGTGTCTTCCTCTTGTCCTCATCATCAGGAACAG GTTGAAGTATGCTTTGACATACCGTGAAGTCATCTCCATCCTCATGCAGAGGCATATCCAAGTCGATGGTAAAGTCAGGACTGACA AAACATACCCTGCTGGTTTCATGGATGTTGTCTCCATCCCCAAGACCAATGAGAGCTTCCGTCTTCTTTACGACACCAAGGGACGT TTCCGTCTCCACTGCATCAGAGATGAGGAAGCAAAGTTCAAGCTTTGCAAGGTGAGGGCTATCCTGCTCGGACGAAAGGGAATCCC TTACCTCAACACTTACGACGGTCGCACCATCCGCTACCCCGATCCGCTCATCAAACCGAACGACACCATCAAGCTCGACCTCGAGG AGAACAAGATTGTCGAGTTCATCAAGTTCGACGTCGGCAACGTTGTGATGGTGACTGGCGGTAGAAACAGAGGGCGTGTTGGTGTC ATTAAGAACCGTGAGAAGCATAAGGGAAGCTTTGAGACGATTCACATCCAAGACTCTACGGGGCATGAGTTCGCCACGAGGTTGGG TAATGTGTTCACTCTGGGGAAAGGGACTAAGCCGTGGGTGTCTCTTCCAAAGGGTAAAGGTATTAAGCTGACCATCATTGAGGAAG CTAGGAAGAGGCTTTCTGCTCAGCAAGCTGCTTAGATGTTGAATCGTTCAAGACCGTTTGTTCGCTTCTTGCTTCAGTTTTGAGTT TGTTTTTTTCTTTCTATTACATGTTTCTTTCTTGCAAAACCCCATAAGAAAAAGAAAAACAGCTGAACGTTTTAGAGAGTTTTGTA ATATTTGTATTGATATTTTTTTATAGTAACCTACTCTTCAAAATCG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_565414 40S ribosomal protein S4-1 [Arabidopsis thaliana]	1311	3e-142
XP_002884052 40S ribosomal protein S4 [Arabidopsis lyrata subsp. lyrata]	1310	3e-142
NP_568179 40S ribosomal protein S4-2 [Arabidopsis thaliana]	1309	4e-142
BAB11167 40S ribosomal protein S4 [Arabidopsis thaliana]	1304	2e-141
NP_200650 40S ribosomal protein S4-3 [Arabidopsis thaliana]	1303	2e-141

Swiss-Prot top hits (Blast detail)	Score	e value
Q93VH9 40S ribosomal protein S4-1	1311	1e-143
P49204 40S ribosomal protein S4-2	1309	2e-143
Q8VYK6 40S ribosomal protein S4-3	1303	1e-142
P46300 40S ribosomal protein S4	1259	1e-137
P46299 40S ribosomal protein S4	1236	6e-135

TrEMBL top hits (Blast detail)	Score	e value
Q8LJW0 40S ribosomal S4 protein	1271	8e-138
B9N3A7 Predicted protein	1265	4e-137
B9RG48 40S ribosomal protein S4, putative	1262	9e-137
C6TN03 Putative uncharacterized protein	1262	9e-137
C6TNY3 Putative uncharacterized protein	1259	2e-136

Arabidopsis top hits (Blast detail)	Score	e value
AT2G17360.1 40S ribosomal protein S4 (RPS4A)	1311	1e-144
AT5G07090.1 40S ribosomal protein S4 (RPS4B)	1310	1e-144
AT5G58420.1 40S ribosomal protein S4 (RPS4D)	1304	7e-144
AT5G07090.2 40S ribosomal protein S4 (RPS4B)	1218	6e-134

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	8			35%


9	6			26%


12	2			9%


6	3			13%


20	1			4%


10	3			13%

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