RadishBase

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Information for unigene UN13896

FASTA Sequence

Unigene ID: UN13896	Length: 1232	SSR	SNP
GGGAGACGACATCTGTATCTATCTATCTCTCTCTCTCTCTCTCTCTAGAGCTGGAGTGAACTGTTGAGCCCTTTGGTTTCATCGAG AGACCCCTAAAACCCGATCTAGGTGAAGAATGGCGTCTTCTTCTTCCTTCTCCCTCACCTCTCCGGCTGCTTCCGTCTATGGAGGA GCCACTCAAACCTCGTCGCAGTTACCTCTCCCAACCACTCGCTCTCGTCTCCCTCGCAGAGTTTCGTTCCGTCTCTCCTCCGCCAA GCCTAAGCTTCGCTTTCTCTCCAAGCCTACTCGCAGTAGCTACCCTGTGGTGAAAGCCCTATCTAACCAGGTTGGTGGAGGTGCAT CATCAAATGCTTCAGCTCCTGCAGGACCCTCAGCTGAAGGAAAGGATACAAACTCATCAAAAGACTCTTCTTCACCTGATTTAGCT ACAGAGGAGTCTATCTCTGAGTTCCTGACCCAAGTCACAACTCTTGTCAAGCTTGTGGATTCTAGAGACATTGTCGAGTTGCAGTT GAAACAGCTCGACTGTGAGCTTGTCATCCGGAAAAAGGAAGCCTTACCTCAACCACAAGCCCCTGCGCCTTATGTTATGATGCAGC AACCAAACCAACCATCCTATGTGCAAGCAGCGGCTCCTCCTCCTTCTGCACCTGCTGCCTCACCTCCACCTTCTTCTACTCCGGCC TCTTTGCCCGCACCATCCCCACCTAGTCCAGCGAAATCATCGCTTCCAACTGTTAAAAGTCCCATGGCAGGCACATTCTACCGCAG TCCAGGACCTGGTGAACCACCTTTTATCAAGGTTGGAGACAAAGTGCAGAAGGGGCAAGTTCTATGCATCGTCGAAGCCATGAAGT TAATGAATGAAATAGAGTCTGATCAAACCGGAACCGTAGTGGATATCGTTGCAGAAGACGGCAAGCCTGTTAGCCTCGACACTCCT CTGTTTGTGGTTCAACCGTAGAATCGACACCATGAGAAACGGAGAAACGTGGCTACTTTAATTCAATCTCTCTGCTTTGGTAATAC TGTTTTCTTGAGTTTTACGAATGTCTTCTTCATTGTTACTGTCAAACTCTCTAGTTTTTTTTTGGTGAGGAGGAAGAAAGAGTTTT TAGTTTCTATTGGTTAAACAAAAAAGAAAAAGAAAAAAAGATGAGACCTCTGTTTTATTTCTTTCTTATACACACGCACATTCTTG GTTCTGTTTTATTGCAATTTTCCTGTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002873773 BCCP/BCCP-1/BCCP1/CAC1-A/CAC1A [Arabidopsis lyrata subsp. lyrata]	1112	4e-119
NP_197143 biotin carboxyl carrier protein of acetyl-CoA carboxylase 1 [Arabidopsis thaliana]	1093	6e-117
AAC49114 acetyl-CoA carboxylase biotin-containing subunit [Arabidopsis thaliana]	1093	6e-117
2208465A Ac-CoA carboxylase	1084	7e-116
AAB51193 acetyl-CoA carboxylase biotin-containing subunit [Arabidopsis thaliana]	1021	1e-108

Swiss-Prot top hits (Blast detail)	Score	e value
Q42533 Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic	1093	3e-118
Q42783 Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic	640	9e-066
Q9LLC1 Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic	565	4e-057
Q06881 Biotin carboxyl carrier protein of acetyl-CoA carboxylase	292	2e-025
P37799 Biotin carboxyl carrier protein of acetyl-CoA carboxylase	277	1e-023

TrEMBL top hits (Blast detail)	Score	e value
Q3E9G9 Putative uncharacterized protein At5g16390.2	952	9e-101
Q39346 Biotin carboxyl carrier protein (Fragment)	752	1e-077
B9IQ25 Predicted protein	747	6e-077
A8RWF8 Biotin carboxyl carrier protein subunit	730	5e-075
B9RM56 Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1)	696	5e-071

Arabidopsis top hits (Blast detail)	Score	e value
AT5G16390.1 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase/ biotin binding	1094	2e-119
AT5G16390.2 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase/ biotin binding	952	5e-103
AT5G15530.1 BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2); biotin binding	566	3e-058
AT3G15690.2 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related	159	5e-011
AT1G52670.1 biotin/lipoyl attachment domain-containing protein	157	8e-011

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	6			33%


6	5			28%


8	1			6%


12	1			6%


10	4			22%


7	1			6%

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