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Information for unigene UN13965
| FASTA Sequence |
| Unigene ID: UN13965 | Length: 1347 |
| SNP | GTTGCAGAAGAAGTGGACTAACAATGGCGGTCCTCGAAGCTGCTCTCTCCATCCTCTCTTTCTCCTCATCCTCCTCCTCTTCTTCT
TCCTCCTCATCCTCAAAACCTCATCTCTTCTCTAGGCAAACTAAACCCATCTCCTTAAGTATTCGAACTCCCACTAACCTCTCTCC
CGTCTCCCCTCTCAGTATTCCTCTTCGTGCTCGGCGACTCGTCTCTGTATTCTCTTCCGTCGCAGAGGAAGAAACTTCCCTTACGG
ATGAGAAGACCGAAGAAACCACCCAGACGACGAATCTCAAAAGGAAGCTCTTTGTGTTCAATCTCCCCTGGTCTATGAGTGTCAAC
GACATCTCCAACCTCTTCGGACAATGCGGAACTGTCTTAAGCGTCGAGATAATAAAGCAAAAAGATGGGAAAAACAGAGGCTTTGC
TTTCGTAACCATGTCTTCTGGTGAAGAAGCTCAATCCGCTGTTGAAAAGTTCGATTCTTTCCAAGTCTCAGGGAGGATCATAAGGG
TTAACTTTGCAAGAAAGTTCAAGAAGCCTCCTAAGCCCCTTCCTCCTTCTGCTTCCTCTTCCCCTGGAGAAACACGTCACAAACTC
TATGTGTCTAACCTCGCTTGGAAAGCGAGATCGACTCATCTCCGTGAGTTCTTCACTGCTGCTGACTTCAACCTGGTCTCAGCTCG
TGTTGTTTTCGCTGACCCTGGAGGAAGAGCTTCTGGCTATGGCTTTGTCTCGTTCCTTACTAGAGAAGAAGCTGAGGATGCAATCT
CTAAACTCGACGGGAAGGAGCTTATGGGCAGACCTATCAGTCTTAAGTTTAGTTTGAGAAGCGCTGGTGAATCTGAAGATAGTAAC
ACAATACAAGACAACAATACTTCTGAAGAAGAACCTGAAGTGGCTAGTGACACAACAGAAGCCTCTGAAGAAAAAACTGTGGAGTG
ATGATGACTCTTATTCTTTCTCGGTTTATTCTTCACTACACATCTTTATTACAAAGTTTTGAATATGTAAGAACACAAAAATTAGA
ATTTATTGGCAAACTAAGACTTCAAAAATCCTTGCTAATGTAATGATGAATCAATCACCAAGCCATTCCGTATCCTGTAGCTTCAT
CATACCTAGTAAGTTCATCAAACGAGGCACAGCTTCCTGTTTGGTAGTGTCTTCCTTTGATCTTCATGGTGACATCCCTCGTCTTA
CCCATGAACTGCCCTGTAGAATACGACCTCGAAAATCGCCAAGCCGATGAGGCTTCCGGAAGCCTTTTGCTTGAGCTAGTTGTAGT
AGTAGTAGGTGTGTTTTCCTCAAACATCATGACACTGCTGCCCGTTTGGTAATGTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002879549 hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp. lyrata] | 1022 | 1e-108 |
| NP_181084 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] | 996 | 1e-105 |
| XP_002279685 PREDICTED: hypothetical protein [Vitis vinifera] | 753 | 2e-077 |
| CBI33876 unnamed protein product [Vitis vinifera] | 724 | 4e-074 |
| XP_002527668 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 708 | 3e-072 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19684 33 kDa ribonucleoprotein, chloroplastic | 320 | 1e-028 |
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 281 | 4e-024 |
| Q6NKR1 RING-H2 finger protein ATL2H | 217 | 1e-016 |
| P31209 Polyadenylate-binding protein, cytoplasmic and nuclear | 217 | 1e-016 |
| Q4VXU2 Polyadenylate-binding protein 1-like | 196 | 3e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O82299 Putative chloroplast RNA binding protein | 996 | 8e-106 |
| B9SNU9 Ribonucleoprotein, chloroplast, putative | 708 | 2e-072 |
| B9MU33 Predicted protein | 675 | 1e-068 |
| A9PK26 Putative uncharacterized protein | 674 | 2e-068 |
| C6TEI0 Putative uncharacterized protein | 656 | 2e-066 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G35410.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 997 | 3e-108 |
| AT4G09040.1 RNA recognition motif (RRM)-containing protein | 413 | 2e-040 |
| AT4G09040.2 RNA recognition motif (RRM)-containing protein | 363 | 1e-034 |
| AT3G52380.1 CP33; RNA binding | 314 | 6e-029 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 292 | 2e-026 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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