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Information for unigene UN14135
| FASTA Sequence |
| Unigene ID: UN14135 | Length: 1453 |
SSR | SNP | GGACTTTCATTTTAAGTGTTAAAACCATTTCCTTATCCACACGCCCAGAAACGTTCTCCTCCGGTCTGAAAAAAAAAATGGCGACT
GCAAACGCTCTCACTTCCGCCTCTGTCCTCTGCTCCTCACGACAGGGAAAGCTGAGTGGTGGAAGTCAGCAGAAAGGTCAAAGAGT
AAGCTACAGGAAAGCAAACAGACGTTTCAGCGTTAGAGCTAACGTCAAGGAGATTGCTTTCGACCAGAGCTCCAGAGCTGCTCTTC
AAGCTGGTATCGACAAGCTTGCTGATGCTGTTGGTCTCACTCTTGGCCCTAGAGGGAGGAATGTTGTGTTGGATGAGTTTGGAAGT
CCCAAGGTTGTGAACGATGGAGTCACCATTGCTAGGGCTATTGAGTTACCTGACGCCATGGAGAATGCTGGTGCTGCACTTATCCG
TGAGGTTGCGAGTAAGACTAATGACTCCGCTGGTGATGGGACAACCACTGCCTCTGTCCTGGCTCGTGAAATCATCAAACACGGAT
TGCTGAGCGTCACTTCCGGCGCCAATCCCGTCTCCCTCAAGCGAGGAATCGACAAGACTGTTCAAGGTTTGATCGAAGAGCTCGAG
AAGAGAGCTAGACCTGTCAAAGGCGGTAGCGACATCAGAGCCGTGGCTACGATCTCAGCTGGAAACGATGAGCTCGTGGGAGCGAT
GATCGCTGACGCCATCGATAAAGTTGGACCTGATGGTGTTCTGTCCATCGAGTCTTCGTCCTCTTTTGAAACCACCGTCGAAGTCG
AAGAAGGGATGGAGATTGACAGAGCTACATCTCTCCTCAGTTCGTTACCAACCCTGAGAAGCTGCTGGTTGAGTTCGAGAATGCTA
GAGTGTTGATCACTGATCAGAAGATCACTGCCATCAAAGACATCATCCCAATCTTGGAGAAAACCACTCAGCTTCGTGCTCCGCTG
CTGATCATCGCAGAGGATGTTACAGGCGAGGCCTTAGCAACTCTCGTCGTGAACAAACTCCGCGGTGTTCTCAACGTTGTCGCCGT
GAAAGCTCCAGGGTTTGGAGAAAGGAGGAAAGCTATGCTTCAAGATATCGCAATCTTGACAGGAGCTGAGAATCTGTTGGAAGCTG
GAGTGATTGATCCGGCTAAAGTGACCAGATGTGCGCTTCAGAACGCTGCTTCGGTTGCAGGGATGGTGCTGACCACTCAGGCTATC
GTTGTTGATAAGCCTAAACCTAAGGCTGCTGCTGCTGCTGCACCTGAGGGCCTCATGGTGTAATGAAGTTGCACATGTCACATGTG
TATCTCTTGTCCCCCATCTATCTATTTGCGATGTTTTTAAGTTATTTTCTTCTCTTGGGGAAATGACTCAATGAGTAGCTTTGTTT
AAATGAGAAACAATTATCTTTTTTTGAGTAAGGATCGTTCTGATTGCATAATAAAAGTTTTGTATTAAGAATGCTGG
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| GenBank top hits (Blast detail) | Score | e value |
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| P34794 RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor | 1123 | 3e-120 |
| XP_002880957 CPN60A [Arabidopsis lyrata subsp. lyrata] | 1074 | 1e-114 |
| NP_180367 chaperonin-60alpha [Arabidopsis thaliana] | 1067 | 8e-114 |
| AAM63618 putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] | 1060 | 5e-113 |
| XP_002313525 predicted protein [Populus trichocarpa] | 1004 | 2e-106 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P34794 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1123 | 1e-121 |
| P21238 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1067 | 3e-115 |
| P21239 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) | 958 | 1e-102 |
| P08926 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 921 | 3e-098 |
| P08823 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) | 852 | 3e-090 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L5U4 Putative rubisco subunit binding-protein alpha subunit | 1060 | 4e-113 |
| B9HQD5 Predicted protein | 1004 | 1e-106 |
| B9T7X8 Rubisco subunit binding-protein alpha subunit, ruba, putative (Fragment) | 1002 | 2e-106 |
| B9MZ75 Predicted protein | 1001 | 2e-106 |
| Q9ZTV1 Chaperonin 60 alpha subunit | 989 | 6e-105 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G28000.1 CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding | 1067 | 3e-116 |
| AT5G18820.1 EMB3007 (embryo defective 3007); ATP binding / protein binding | 639 | 1e-066 |
| AT5G56500.2 ATP binding / protein binding | 514 | 4e-052 |
| AT1G55490.1 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 513 | 5e-052 |
| AT1G55490.2 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 513 | 5e-052 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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