 |
Information for unigene UN14233
| FASTA Sequence |
| Unigene ID: UN14233 | Length: 1945 |
| SNP | CCCCCAAAAAAACTTTTGCTTTTGATGAATTCTAATCAATTTCACACAAGGGACGATAAGTATCTCGATTATAAATTATCAAAGCT
AACATTTAATAAAGAACAACAATGTCTTGAAGGTCTCATCTAAAAACACAACTTAAATGGAAATTAGGCAAAGACACATAAACGAG
AAAAACATCCAAAGCCAGCAAGCCTTTCTCCATGACGCTGCTGCTGCTTCACTTAGATAGTTTTGCAAACATGTTTCCGTAAAACT
TAGCCTCCTTTTTGTTAAACTCCTTCATTTTCTCCTTCAACCTTCTCTGCTCCACCTTCACTTCCCTGTTATCGGGATCAATTTCA
AGGGCCTTCTTGACATCAAACTCGGCCAAGTCCAAATCAGCCAACTCCATGTAGGCTTGCGCTCTCCTGTAAAGGGCTTTCACATT
GGTGCTTTCCAGCTCTAGCACCTTTGTGCATAGCTTTTCAGCTTGCCTGTATTCTTTCAGCTTCAGCTTGCAAGCTGCGTCGTTCA
GATTGCACGCCACTTTCAATGCTTTTGCTTGCTTCTTCTCCTCCTCACTGAAGGATGAGTCGTATTCAATGAATTTGACAGCCTTC
TCGTATCTCTTGGAAGCGAGTGCATATTTGCCTGCTTTGAACTTGGTATTTCCTTCTTCCTTCTTCTTACCGGCAGCTTCAATCTT
CTCCTCAGTGTTCATGTCCCACGATTCCCTTTCCTTGTCGAAAGACACAAGGTCAACCTCATAATAGACGGTTGAGTTTGGCGGCA
CCACAGCTAATTCCTGCTTTGACTCAGTTGAACCAAAAGCATACTCTGGGTCTATGGTCACCAATGCCACTTCACCCTTCTTCATC
TTCATCACGGCTTTATCAAGTCCATCGATCACTTGCTCTTCATCAGTTTTGAACTCAAAGAGCTCTTCACCTTCACCGTGACCTTT
CTTTAGGAATACAGTACCGTCTCCAAGTTTCCCTATCAGTTTCACTTTCACGACCGCTCCGTCGTTGGGACGCTCATATCCTTCCC
CTTCTTTCAGGATTTTCTTGATGACCTTGTTATCATCGGTCACTTCAGAAACTGTCTTCCAGGAAACCAACTCCAGCTCGATCTCA
AGTGTCGCGTTTGGAGGAACCGCAGCTTCACCACCAGAGGCTGGCTTGCCCTTCTCCCCGAAACCATATTGTGGTTTAACTGTCAG
GAGGACTTCTCTGCCTTCTTCATGGTTTCACAGTCTTAGCAAGCGCAGGACAGAAGCAACCATCTTTAACAGTGAACTCAACACCA
TCAGATTTCCCAACAACTGTACCATCCTCAAGCTTAGCTTCATACTTAACAAGAACTTCATCGAGATCCTTTGGTGTCTCCCACTT
CTCCCCCGCAGCAACAATCTTCTTAAACACACCACCGTCCTTGCATATGTCCTTAACACTAGACCAGGAAAGCAACTCCACATCAA
ACTGAAGCGTGGCATTGGCAGGAATAGTCGGCGGAGAACCAGATTCACCATACGCCAGCCGGGAAGGGATAGTAAACACAGCGTTT
TCGCCTTTCTTCATAGTCTTAATACCAATATCCCATCCCTTAATAACCTGACCTTGACCGAGAGTGAATTTGAAAGGCGTGCCCCT
GTCGCGGCTCGAATCGAACTTGGTCCCATCAAGCAAAGTACCAGTGTAATGCACTTCAACTTCGTCGCCGTTCTCAGGAGTCTCGA
ATCCTTCGCCTTCCTTGACGAGTTTCTTCTTCAAACCTTGCTGGATCTCCTTCTCCTCTCCGACTTTGAGGAACGCCGCGTCGTCG
CCGAAATCCATGTCGTCGTCTCCGCCGTTGATTCCACCGACGGGAGGCATCTCGAAATCTTCATCCATCTCGAATTTGAAAGTAGC
GTTGAGGTAAGACGAATCGCGAGAGAACAGTTCAGTTTTGTGAGGAGAGCTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_189160 rotamase FKBP 1 [Arabidopsis thaliana] | 1566 | 2e-171 |
| AAB82061 rof1 [Arabidopsis thaliana] | 1565 | 2e-171 |
| BAB02082 peptidylprolyl isomerase; FK506-binding protein [Arabidopsis thaliana] | 1561 | 6e-171 |
| XP_002883594 peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata] | 1559 | 1e-170 |
| NP_001118695 rotamase FKBP 1 [Arabidopsis thaliana] | 1557 | 2e-170 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q38931 70 kDa peptidyl-prolyl isomerase | 1566 | 7e-173 |
| Q43207 70 kDa peptidyl-prolyl isomerase | 1302 | 3e-142 |
| P27124 Peptidyl-prolyl cis-trans isomerase FKBP4 | 616 | 9e-063 |
| Q9TRY0 Peptidyl-prolyl cis-trans isomerase FKBP4 | 613 | 2e-062 |
| Q02790 Peptidyl-prolyl cis-trans isomerase FKBP4 | 610 | 5e-062 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B3H746 Uncharacterized protein At3g25230.2 | 1557 | 1e-170 |
| B9TA12 Peptidylprolyl isomerase, putative | 1454 | 1e-158 |
| B9T7Z2 Peptidylprolyl isomerase, putative | 1453 | 1e-158 |
| B9GQN7 Predicted protein | 1448 | 5e-158 |
| Q0WSA8 Peptidylprolyl isomerase | 1363 | 4e-148 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G25230.1 ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase | 1566 | 6e-174 |
| AT3G25230.2 ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase | 1557 | 6e-173 |
| AT5G48570.1 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative | 1363 | 2e-150 |
| AT1G58450.1 peptidyl-prolyl cis-trans isomerase FKBP-type family protein | 400 | 9e-039 |
| AT3G54010.1 PAS1 (PASTICCINO 1); FK506 binding / binding / peptidyl-prolyl cis-trans isomerase | 334 | 4e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
