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Information for unigene UN14241
| FASTA Sequence |
| Unigene ID: UN14241 | Length: 1555 |
| SNP | AAACAAGAAGAGATGTAAGTGCAAAATGTCATCTTATGGTTTTCAGTACAAAAAGAGCATCTTGATCATCACATCATTGTGTACCG
CTACTCGCCCCACACATTTGCCCCACTTTTTAAACTGCTAAAACTTGTTCTACCCTCCGACAAGCTAGATTGCTAGAGTACTTCAA
AAGAAAGGATCAAAACAAAAATAAAAAGAGGCTCGAAAACTTTTGGTCTTCATTCTTCAACGTTCTTTCCCTTACAGCTCATCATG
AGCGGTGGCGTCTTTCTCCTCTGAGGTTTCCTCGCTAGCTTCGGATTTGGCCTCGGTCTTTGATTCAGTATCTGATTCATCTCCTT
CATCTTCCTCTGCTTCATCTTCAGCATCAGTTTCTGCTGGAGCGTCCTTGGATTCCTCTTCCTCTTTCTTCTTCTCAATCTCATCG
AAAGCTGCTTTCTCCGCATCCTTGAGCTTTCCCCATGTTTCATCAGCCAACTTCTTGGCGTAGTCTGGGTCATCGCAGATCAAGAC
ATTGTCGAACAATGATCCTGATTTCACCTGCCACAATTCGATTCCAACATACTTCAGTTTGGGGAAGACGTAGAGCTCTGCGTCAT
CCTTGAAGTCAGGGTTGTCAATCAGTGGAGCTTCCCACTTGCCCTTGTAGTTGGGGTTCTTGATTTGCTTGGGCTTCCATTCACCC
ATGTACTCAGGGTTGGGAATGGTAGGGGCAGTCCACTCACCATCTTCTTCCTCATCCCAGTCCTCAGGCTTCGTTGCATCGGTATC
TGGGATCTCCTTTGGGATATCATCGTATCCGTCAGGTTTCTTGTCTTCAGGGTCGGGAATGTACTCTTGCTCGTCCCAGTCCTCAG
GCTTCTTGGCGCTGGGGTCCTTGATCTTCTTTGGTGGGAGAAGATCCCAGTCAGAGTACAGGCTACCGGTTTGCTTCTCAACATTG
TCAATGAGAATACTGTAAGTAGCATCTGGGCGGAGGATGAATGTGTACACGTGGGTGAGCTGGTCAGTTTCACATGGAACATCCTT
CTTGATCAGGTGGTTGGCGTCATTGTAGGTAAGGATAGCATGCACTTTCTTCGTGCTGTAGCCACAGATATCGGGACCAAACATGA
TGCTGTATGGGGTGTCACCACCAAATTTCTTCTGGTCAACATCACCACTGAGCAGCTTCATGTAACCACCACCACAGTCAAGCTTC
TGCTCGTGCTTGACCGAGAACTGAAAGACTAAGGTTTTGTCCTTGTTGCTAAATTCAGGGAACTCAGCTGAAATGGCGTAGAATCT
ATAGTCCTCACTGGTCTGGATACCTTTATCGTTAGCATCACCAGACCAGTTTCCTGCAGTGTGGCTCCACTCCCCAGCAGACTTGT
CATCTTTCTTCCACTCAGATTTAACCCATCTGTTCTCCCATCCATCATCAAAGCGCTCCTCGAAGATAACTGCGGCGGAAGCGATC
GCGATGAGACCGATAAGAATCAACGAGAGGAGGCTAAGGATTAGTTTCGCCATTGCTAAAAACTCAGATCGGAGCTGCTTCGGTGA
GATTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAM63796 putative calcium-binding protein, calreticulin [Arabidopsis thaliana] | 2146 | 7e-239 |
| XP_002892492 calreticulin 2 [Arabidopsis lyrata subsp. lyrata] | 2141 | 3e-238 |
| NP_172392 calreticulin-2 [Arabidopsis thaliana] | 2139 | 4e-238 |
| AAC24083 Match to calreticulin (AtCRTL) mRNA gb|U27698 and DNA gb|U66344. ESTs gb|T45719, gb|T22451, gb|H36323 and gb|AA042519 come from this gene [Arabidopsis thaliana] | 2104 | 5e-234 |
| XP_002892491 hypothetical protein ARALYDRAFT_471010 [Arabidopsis lyrata subsp. lyrata] | 2100 | 1e-233 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LC80 Putative calcium-binding protein, calreticulin | 2146 | 5e-239 |
| Q8H792 Putative uncharacterized protein (Fragment) | 1932 | 3e-214 |
| C4PB36 Calreticulin | 1889 | 3e-209 |
| B9RFI2 Calreticulin, putative | 1876 | 9e-208 |
| A0A762 Calreticulin-1 | 1872 | 3e-207 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G09210.1 calreticulin 2 (CRT2) | 2140 | 1e-240 |
| AT1G56340.1 CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding | 1977 | 1e-221 |
| AT1G56340.2 CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding | 1827 | 2e-204 |
| AT1G08450.1 CRT3 (CALRETICULIN 3); calcium ion binding / unfolded protein binding | 1278 | 1e-140 |
| AT1G08450.2 CRT3 (CALRETICULIN 3); calcium ion binding / unfolded protein binding | 700 | 1e-073 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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