RadishBase

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Information for unigene UN14496

FASTA Sequence

Unigene ID: UN14496	Length: 1237	SSR	SNP
CTTCCCCAATCTCCTTCCAAAGTCTCTCTCCTCTCTCTCTATAATCTTGTCTTTTCTCTCTCCATGTCCGAACGCATCCTGTCTCA AAAACCATCGATACAAACCTCGATCTTTCTCCACTAGCAACTGATCTACACATCAAACGGTCTCACGCATCTCTCTGTACAGCTAT TATGGCCGCCGTCTCCTCAAACCCTCGCACCGTCGAAGAGATCTTCAAAGATTACACCTCTCGCCGCGCCGCTCTTCTCCGTGCTC TCACCAAAGATGTTGATGATTTCTACTCTCAATGCGATCCGGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCGTGG GAAGTGAATCTACCGGCGGAGGAAGTTCCACCGGAGCTACCTGAGCCTGCGCTCGGTATCAATTTCGCTAGAGATGGTATGCAGAG GAAAGATTGGCTCTCTCTTGTTGCTGTTCATAGTGACTGTTGGTTGCTCTCTGTTTCTTTCTACTTTGGTGCTCGCCTTAATCGCA ACGAGAGGAAGCGGCTATTCAGTCTGATCAACGATCACCCAACTCTGTTCGATGTAGTGACTGGTAGGAAACCAATCAAAGACAAC AAGCCAAGCTCAGACTCCGGAAGCAAATCCAGAAACGGTGGCACTAAGAGATCAATAGAAGGGCAGCCAAAGAGCACAACACCAAA ACTGATGGAAGAGAGGTACGAAGAGGAGGAGGATGAAGAAGAAGAAGACGAGCATGGAGACACTCTCTGTGGAAGCTGCGGAGGCA ACTACACACAAGATGAGTTCTGGATTGGCTGTGATGTCTGTGAACGTTGGTACCATGGAAAATGCGTGAAGATCACTCCTGCTAAA GCAGACAGCATCAAGCAGTATAAATGCCCACCTTGCTGTGCAAAGAAAGGAGGAAGACAGTGATTATGTTGATCATCATCATCTCC CAAAGACTCTGGTTATCATGTCTTAATCGATATATTAATCAACCTTCCTTCTATCTTTTTTTTTTTTTAACCTTTTAATTTTAAAA GCATACAACACTCTCTCTCTCTTTGGATCTCTGTAAAAGGAATTCAAGAAGTTGAGAGAGTGTAGCAACAACAGCTGTTTTAAGTA TTATTATTCAGATAAGAAAACTGGTTTGTTCCATCAAGTATGTCACGGACTCAGGGGGGAATTTGTATAATGTAGTCGAAGCTTAA GCATTGAACTGCATTTTGCACTCCAAAAAAAAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884835 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]	1225	3e-132
NP_187729 alfin-like 2 protein [Arabidopsis thaliana]	1209	2e-130
XP_002873214 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]	1089	2e-116
NP_196180 alfin-like 1 protein [Arabidopsis thaliana]	1083	9e-116
XP_002265093 PREDICTED: hypothetical protein [Vitis vinifera]	1006	8e-107

Swiss-Prot top hits (Blast detail)	Score	e value
O81488 PHD finger protein At5g26210	839	7e-089
Q12830 Nucleosome-remodeling factor subunit BPTF	142	5e-008
Q9W352 PHD finger and CXXC domain-containing protein CG17446	125	5e-006

TrEMBL top hits (Blast detail)	Score	e value
Q9SRM4 At3g11200/F11B9.12	1209	1e-130
Q9FFF5 At5g05610	1083	6e-116
Q3EB90 Putative uncharacterized protein At3g11200.2	1012	1e-107
A0FK64 PHD4 (Fragment)	1000	3e-106
Q6Q7P5 Nucleic acid-binding protein	935	9e-099

Arabidopsis top hits (Blast detail)	Score	e value
AT3G11200.1 AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding	1220	4e-134
AT5G05610.1 AL1 (ALFIN-LIKE 1); DNA binding / methylated histone residue binding	1108	4e-121
AT5G05610.2 AL1 (ALFIN-LIKE 1); DNA binding / methylated histone residue binding	1108	4e-121
AT3G11200.2 AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding	1018	1e-110
AT3G42790.1 AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding	855	9e-092

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			17%


9	1			8%


11	3			25%


21	2			17%


8	1			8%


12	3			25%

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