RadishBase

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Information for unigene UN14717

FASTA Sequence

Unigene ID: UN14717	Length: 1463		SNP
GGGCACTTCTTCATTCACATCTAGTATAACAATAGAAGATGAAGAGTCACTACACAAAGACCGTTTCTTCTGTTGTTCTCTTGTTT TGTCTCTTCATCACGTCTGCCTCTTCAAGTTCCTTCATACGGCAAGTCACTGATGACTTCATCACAAACTTGCAACATGGTGATGG AGATGGACCAGAACCAATCCGAGGAGAAGCGCACTACTTGCGTAAACATGTTCAAGATGGAGATGGACCAGACCCAATTCAAGGAG AAGCCCATTACTTACATAACCATGATCAAGAGATCTCATCACGTGACTATAAAGTCTCAGCTTCAAACACAGTGAAGGGTCTAAGA AGTCGTCCACCATCTTCTTACTCTCTAAAGATGGAGTCGTTCAACACGCTACTCAAGTCAAAATACTCGGAGAGATATGTATCTCG TCCTTTCTCAGCCGCTGGCTATAACTGGACACTTGTTGTGTATCCGAACGGGAACAAGAATGACAAAGGTGCAGGGTACCTCTCGC TTTACGCAGCCATAGACAACTCCACTCTCGCTCCACATGAAGAGGTTTACGTTGATCTCAGGTTTTACGTCTTCAACAAGAAACAG AAGAAGTATTTTACCATCCAAGATACCGATGTATGGAGATTTAATATCTTCAAAACGATGTGGGGGTTCTCTCAGGTTCTCCCTGG TTATACATTTAAAAGTCCGTATAACGGATACCTCTACGATGGAGATCACTGTGAGTTTGGTGTTGATGTGACCATACCCTCTGTCT TTCAAACATCAGAACTTTTTTCAGTCACTGGTAACTTCAAAAACCCTACATTCACCTGGACACTTCTGAAGTTCTCCACATTGCTC GAAGATACTTACTTCTCTGATGTGTTCTCCATCGGAGGAAGACGTTGGAATATACAAGTGAATCCAAGTGGTCGTGACAAGGGAAA GGGAAAAGCTTTGTCCATGTATCTTATCGTTAATAAGACCGAGGAACTCAGACCCTATGAGAGAATTTATGTTCGAGCCAAGCTTC GAGTTCTTAACAAATTCAAATTCAGAAACGTTGAAAGGCAAATTGATAACTGGTTCAGTCGCTGGGAAACTGGACGTGCATATGGT TGGGGTTCTAGTGAATTTGTCCCTCTCTCTAATCTCAGAGATTTATCAAAGGGCTTCCTTGTTGATGATAAGTTGACTGTCCAAGT CGAAATTGAAACCGTTTCTAAAACCATGTACTTTCCAAGTTAGAGTTTCTCTAACCACGTACGGACATGCAACTCAATGTGTTTGC TTTGTTAACTGTTATCAACCACCTAAGTACTAATAAGTCCGTCTATGTGTTTCAATAAGTGAGTTTGTATTAATAAGTACGTGTTT GTGTTACAATAAATGAGTCTGTATTCTCATCATGCATCTATCAAACATCTCTCGTCTTTTAAGCACCAGGAAGTTTTAATTTACCG C

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002883241 hypothetical protein ARALYDRAFT_479561 [Arabidopsis lyrata subsp. lyrata]	1246	1e-134
XP_002893426 predicted protein [Arabidopsis lyrata subsp. lyrata]	1229	1e-132
NP_566660 TRAF-like family protein [Arabidopsis thaliana]	1206	6e-130
BAB02817 unnamed protein product [Arabidopsis thaliana]	986	2e-104
NP_188671 TRAF-like family protein [Arabidopsis thaliana]	986	2e-104

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FPT1 Ubiquitin carboxyl-terminal hydrolase 12	182	1e-012
Q84WU2 Ubiquitin carboxyl-terminal hydrolase 13	170	3e-011
Q6GR09 Speckle-type POZ protein-like	131	1e-006
A0JMG1 Speckle-type POZ protein-like B	125	6e-006
Q7ZX06 Speckle-type POZ protein A	123	1e-005

TrEMBL top hits (Blast detail)	Score	e value
Q9LTQ5 AT3g20370/MQC12_13	1206	4e-130
Q8W0Z1 AT3g20360/MQC12_11	986	1e-104
Q9LTQ7 Genomic DNA, chromosome 3, P1 clone: MQC12	986	1e-104
Q9LTQ4 Dbj\|BAA87936.1	883	1e-092
Q9LRJ7 Gb\|AAD17415.1	629	3e-063

Arabidopsis top hits (Blast detail)	Score	e value
AT3G20370.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein	1210	8e-133
AT3G20360.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein	987	6e-107
AT3G20380.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein	883	6e-095
AT3G28220.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein	672	2e-070
AT3G22080.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein	636	3e-066

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	1			4%


11	5			19%


12	2			7%


7	10			37%


10	5			19%


8	2			7%


20	2			7%

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