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Information for unigene UN15895
| FASTA Sequence |
| Unigene ID: UN15895 | Length: 1174 |
SSR | SNP | GGACGGATCCTCCCTCTTTCCCATGGCCAAGCCATCCTCCTCTCCTCTTCCCAAATCCCAATAACAAAACTCTCCTCTCTCTCTCT
CTCTTCCAACCTTCTTCTTCCGACTCGAAATGGCTGCAGCAATCGCTTCTCTCTCCTTTCCGGCGCTGGGCCAATCCGCAAAGATC
TCCAATTCAACCACGCCTTCTCTTCCTCTCGCCTCCGTCTCCGCCATCTCCAGGAGGATTTCTCGCCACTCTTTGACTTCTTCTAG
GGCTTCCACTTCCTCTTCGAAACTAATCATCCACTGCATGTCTAGTGTTACCGATGTGCCACCTGTATCGGAGACAAAGTCAAACT
TCCTAAAAGCGTACAAGCGACCAATCCCCAGCATCTACAACACCGTCCTCCAGGAGCTCATCGTACAGCAGCATTTGATGAGGTAT
AAAAAGACTTACCGTTACGACCCTGTTTTCGCCCTCGGCTTCGTCACTGTCTACGATCAGCTCATGGATGGTTATCCCAGCGATCA
GGATCGTGATTCCATTTTTCAAGCCTACGTCCAAGCTTTGAATGAGGATCCTAACCAATACCGAACTGATGCGCAGAAGATGGAGG
AATGGGCGCGAAGTCAGACTTCTGCTTCACTAGTTGACTTCTCGTCTAAGGAGGGAGAAGTTGAAGCGATTCTTAAGGACATTTCA
GAAAGAGCTGGGAGTAAGGAGGGTTTCAGTTACAGCAGGTTCTTCGCTGTTGGCTTGTTTCGCTTGCTTGAGCTTGCAGGTGCTAC
TGATCCCACCGTCCTTGACAAGCTTTGTGCATCCCTAAATATCAACAAGAAAAGCGTGGATCGGGACCTCGATGTGTATCGCAACC
TGCTTTCGAAGCTTGTCCAAGCCAAGGAACTACTCAAGGAGTATGTCGAGAGGGAGAAGAAGAAGCGAGGGGAAAGAGCAGCCGAA
TCCCAGAAAGCCAACGAATCAATCTCCAAGTCTCTGGGAGATAATAGCTTATCTTTCTTGGTTTAATGGAAAACAATCAATTTGTG
AATTTTTTTTGTTTTGTTTATTGTTCTTAGTAACAACTGCAACTACTTGACCTAAGACATACGTGTGCTCATTCCTAAGAACAATT
ATATCTCTTTCGATTTTATGAGTTTTTACATAATTGTTAATGCATGTAGTTATTAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABV89647 chloroplast light-regulated protein [Brassica rapa] | 1274 | 6e-138 |
| XP_002884230 hypothetical protein ARALYDRAFT_900469 [Arabidopsis lyrata subsp. lyrata] | 1208 | 3e-130 |
| NP_565491 protein THYLAKOID FORMATION 1 [Arabidopsis thaliana] | 1186 | 9e-128 |
| AAM64943 unknown [Arabidopsis thaliana] | 1173 | 3e-126 |
| XP_002275686 PREDICTED: hypothetical protein [Vitis vinifera] | 1043 | 4e-111 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SKT0 Protein THYLAKOID FORMATION 1, chloroplastic | 1190 | 1e-129 |
| Q7XAB8 Protein THYLAKOID FORMATION1, chloroplastic | 996 | 4e-107 |
| Q84PB7 Protein THYLAKOID FORMATION1, chloroplastic | 933 | 9e-100 |
| B8HQ62 Protein thf1 | 348 | 6e-032 |
| Q8DJT8 Protein thf1 | 342 | 3e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8IXS3 Chloroplast light-regulated protein | 1274 | 4e-138 |
| A7XZB8 Chloroplast-localized protein | 1034 | 3e-110 |
| B9I6H1 Predicted protein | 1006 | 5e-107 |
| C6T9W9 Putative uncharacterized protein | 1005 | 6e-107 |
| B9RW80 Protein THYLAKOID FORMATION1, chloroplast, putative | 994 | 1e-105 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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