RadishBase

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Information for unigene UN16080

FASTA Sequence

Unigene ID: UN16080	Length: 1636		SNP
GGACTAACTCTCACCCTCTCTTCTCAGGTATAGTCGTAAGCAAAAGAGATGGCCCAAAAGGTGGAAGCACAAGGAGGAAATGGAGG CAACCAATGGGATGATGGATCAGAACACGATGCTGTAACCAAGATTACGGTCGCGCCAGGTGGGAGCGGTATTCAATATGTTCAGT TCGACTATGTCAAGAACGGACAACCCGAAACCGCCCCTCTTCGCGGTGTCAAGGGCCGTGCCATCGCAGCTGATCCGTTTGTGATT AACCATCCAGAGGAGCATCTAGTTTCCGTAGAAGGTTGGTATGACTCTTCTGGTGTCATTCAAGGGCTTAAGTTCAACTCCAACAA GAAGTCTTCTGATGTCATTGGATACAATGATGGTACTCCATTTACCGTCCAAGTTCAAGACAAGAAGATAATTGGCTTTCATGGCT TCGCCGGAGACAATCTTAATTCTCTTGGAGCTTACTTTGCTCCTTTAACAGCCGCCCCTCCTTCAGTTCCCCCGAAGAAGCTTGAC GCTAAGGGTGGTGAGTCTGGAGCTGTGTGGGACGATGGTGCACACGACAATGTTATAAAGGTATCTGTAGGACAAGGCGAAGATGG TATAGCAGCTGTCAAGTTTGAATACACAAATGGTTCTCAAGTGGTCATTGGAGCAGAACGTGGGACGCCAACATTGCTTGGATACG AAGAGTTTGAGCTTGAATCAGATGAATACATAACCATCATGGAAGGCACCTACGACAAAATCTTAGGGAGTGATGGGCTGACGATG CTCACTTTCAAGACTAACAAGAACAAAACATATGGACCGTATGGTCTCGAAGGTAGCACACACTTTGATTTCAAGGAGGAAGGTCA CAAGATTACAGGGTTCCATGGACGAGCTGGTTCAGCTATTAGTGCTATTGGAGTTTACTTAGCTCCAGTAGGCACCATCCCCTTGA CTCCTGCCCAACCAACCAAGAAGCTAGAAGCCAAGGGTGGTGAGGGAGGAACATCATGGGATGATGGTGCTTTCGACGGCGTAAGA AAAGTCTCTGTAGGACAAGCCCAAGATGGTATATCAGCGGTTAAGTTTGTGTACAACAAAGGTTCTTCTGAAATCATAGGAGATGA ACATGGAAAGAGTACTCTACTTGGATTCGAAGAGTTTGAGCTTGACTATCCAAGTGAATACATCACGGAAGTAAATGGCACATTCG ATATAATCTTTGGGAGTGACTCCGCGGTCCTTACCATGCTTACGTTCAAGACTAATAAGCCAGCAACATATGGTCCCTTTGGGCTT ACCGCTGGTGAGGCCTTCCATCTCAAAGAGGAAGGCCACAAGATCGTGGGTTTCCATGGAAGTGCTGGTGATTTGCTTCATAAATT TGGAGTTTATGTCCTTCCCATCACCAACTGATCGTGGATCACATGAATTTGTCACAGCTTTTGTGGTCTCTCTCTCATAATGGTCT TTGAACTTTAAATAAGTTGTTTCTACCTTTTACTAGTTTCTATTTGTTTCAAGTTCTTCTCTTTTGTGTTGTTGTTGTTCTGTCTA AGATGGATTTGTGATCCCTCTTAATGAATAAATTTTATTTGAATTATTTGTCTAGTTCCTTGAATTATATATTGATCTTTTAGGTG AC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CAA72271 jasmonate inducible protein [Brassica napus]	1779	3e-196
XP_002883010 jacalin lectin family protein [Arabidopsis lyrata subsp. lyrata]	1575	1e-172
NP_188267 jacalin-like lectin domain-containing protein [Arabidopsis thaliana]	1443	2e-157
BAD95226 putative jasmonate inducible protein [Arabidopsis thaliana]	1204	1e-129
XP_002883007 hypothetical protein ARALYDRAFT_897956 [Arabidopsis lyrata subsp. lyrata]	1118	1e-119

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SAV0 Myrosinase-binding protein-like At1g52040	1269	1e-138
O80998 Myrosinase-binding protein-like At2g25980	1061	2e-114
O04316 Nitrile-specifier protein 4	972	4e-104
O04312 Myrosinase-binding protein-like At3g16440	910	6e-097
Q9SAV1 Myrosinase-binding protein-like At1g52030	842	5e-089

TrEMBL top hits (Blast detail)	Score	e value
P93658 Jasmonate inducible protein	1779	2e-196
O04310 Jasmonate inducible protein isolog	1443	2e-157
O65187 Myrosinase-binding protein homolog	1281	1e-138
Q94AD4 At1g52040/F5F19_10	1261	2e-136
Q56W96 Putative jasmonate inducible protein	1204	8e-130

Arabidopsis top hits (Blast detail)	Score	e value
AT3G16460.1 jacalin lectin family protein	1448	2e-160
AT3G16460.2 jacalin lectin family protein	1448	2e-160
AT1G52040.1 MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding	1269	1e-139
AT2G25980.1 jacalin lectin family protein	1052	2e-114
AT3G16420.1 PBP1 (PYK10-BINDING PROTEIN 1); copper ion binding	1013	6e-110

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	8			17%


8	4			8%


6	3			6%


20	12			25%


10	5			10%


12	5			10%


11	6			13%


7	5			10%

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