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Information for unigene UN16098
| FASTA Sequence |
| Unigene ID: UN16098 | Length: 1623 |
| SNP | GGAGCATCCTTAGCCTTTTATCTTCTTGTTTCACTTGCAACTATGGCCACACATTCAGCTCTTGCCGTCTCCAGAATCCCTGTCAA
ACCGAGGCAGCAGTCTAAGAGTGCCATTCACTCTTTCCCAGCTCAATGTTCCTCCAAGAGGCTAGAAGTGGCTGCATTCTCCGGCC
TGCGAGTCAGCAACAACGGTGGGGAAGCATCTTTCTTTGATGCCATAGCTGCACAAATCACCCCCAAGGCTGTGGGAACATCCACT
CCTGTTAGAGGAGAGACAGTGGCAAAACTGAAGGTTGCCATCAATGGGTTTGGAAGGATTGGTAGGAACTTCCTCAGGTGTTGGCA
CGGCCGCAAGGACTCTCCTCTCGAAGTTGTTGTGCTTAACGACAGTGGTGGTGTCAAGAACGCATCCCACTTGCTCAAGTATGACT
CCATGCTTGGAACCTTCAAGGCCGATGTGAAAATAGTCGACAATGAAACTATCAGCGTTGATGGCAAGCTCATCAAAGTCGTCTCA
AACAGAGATCCTCTTAAGCTTCCATGGGCTGAGCTCGGCATTGACATTGTCATCGAGGGAACAGGAGTGTTTGTTGATGGGCCAGG
AGCAGGGAAGCACATCCAAGCTGGAGCCTCGAAAGTGATCATCACAGCACCAGCTAAAGGTGCTGATATCCCAACCTATGTTGTGG
GAGTCAATGAGCAAGACTATTCTCATGACGTTGCTAACATCATTAGCAATGCATCTTGCACCACCAACTGTTTGGCTCCCTTTGCG
AAAGTTTTGGATGAAGAATTTGGAATCGTCAAGGGGACAATGACAACGACACACTCTTACACCGGAGACCAAAGGCTCCTAGATGC
ATCACACAGGGACCTAAGGCGTGCAAGAGCCGCAGCACTGAACATTGTACCTACTAGCACAGGTGCAGCAAAGGCGGTGTCGTTGG
TGCTCCCCCAGTTGAAGGGTAAACTCAACGGCATTGCACTCCGTGTGCCGACCCCAAACGTCTCTGTGGTTGACCTTGTTATAAAC
GTTGAGAAGAAAGGTTTGACAGCTGAAGACGTTAACGACGCCTTCAGAAAAGCGGCCGCTGGACCGCTCAAGGGCGTTTTAGACGT
CTGCGACACGCCACTTGTCTCTTGTGACTTCAGGTGCTCTGATGTCTCAACCACCATTGATTCTTCCCTCACAATGGTCATGGGTG
ATGATATGGTCAAGGTGGTCGCCTGGTACGACAACGAGTGGGGTTACAGCCAAAGAGTAGTGGATTTGGCTCACCTTGTGGCTGCC
AAGTGGCCGGGAGAGGTTGCTGCTGGAAGCGGAGACCCTTTGGAAGATTTCTGCAAGACAAACCCAGCCGACGAGGAATGCAAAGT
CTATGAAGCTTGATTCCAATCTTTTTCTCCAAACTGTTTCCAAGCAATTTGGTTTATCTTCCAGTGACAATTTATCGATATCATAT
AATCCATACCTCTTAAACTCAATCATGTATTTGGTTTTCTTTATTTTTACTATTATATCAAGAGGCGATGTAATACCCATTCCTTT
TCATTGCCTCATGAGCGATCTCGAGGATATACTATAATTTCAATGTTATGTGCGAAGAAAATATACTTTTAAACT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ34314 unnamed protein product [Thellungiella halophila] | 2230 | 1e-248 |
| XP_002891244 glyceraldehyde-3-phosphate dehydrogenase B subunit [Arabidopsis lyrata subsp. lyrata] | 2175 | 3e-242 |
| NP_174996 glyceraldehyde-3-phosphate dehydrogenase B [Arabidopsis thaliana] | 2174 | 4e-242 |
| XP_002307806 predicted protein [Populus trichocarpa] | 2027 | 4e-225 |
| ACU20783 unknown [Glycine max] | 2026 | 6e-225 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P25857 Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic | 2174 | 2e-243 |
| P12859 Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic | 1975 | 2e-220 |
| P12860 Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic | 1937 | 5e-216 |
| P09044 Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) | 1779 | 1e-197 |
| P25856 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic | 1417 | 1e-155 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WL92 Putative glyceraldehyde-3-phosphate dehydrogenase | 2174 | 3e-242 |
| B9H5U1 Predicted protein | 2027 | 3e-225 |
| B9R8R3 Glyceraldehyde 3-phosphate dehydrogenase, putative | 2027 | 3e-225 |
| C6TG31 Putative uncharacterized protein | 2026 | 4e-225 |
| Q38IX0 Glyceraldehyde-3-phosphate dehydrogenase B subunit | 2012 | 2e-223 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G42970.1 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate dehydrogenase | 2174 | 1e-244 |
| AT3G26650.1 GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding | 1417 | 9e-157 |
| AT1G12900.1 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase | 1413 | 3e-156 |
| AT1G12900.3 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase | 1413 | 3e-156 |
| AT1G12900.2 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase | 1040 | 5e-113 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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