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Information for unigene UN16102
| FASTA Sequence |
| Unigene ID: UN16102 | Length: 1867 |
| SNP | CCCGGAACTTTGCGGACAGAAGGGCACAGTTTGAGACGATAGAGTACACAGAAGATGAATACCAGAAAGAACTTCAGCATATCGAG
CAGGTCTTCACTCCTTTAGTTGAGAAATGCAAAAAGTATGGGAGAGCAATGCGTATAGGGACAAACCATGGAAGTCTTTCTGACCG
TATCATGAGCTATTATGGTGACTCTCCACGAGGAATGGTTGAGTCAGCGTTTGAGTTTGCACGGATATGTCGGAAACTAGACTACC
ACAACTTTGTTTTCTCGATGAAAGCGAGCAACCCGGTGATCATGGTCCAGGCGTACCGTTTACTCGTGGCTGAGATGTATGTTCAT
GGATGGGATTATCCTCTGCATTTGGGCGTCACTGAGGCTGGAGAAGGTGAAGATGGACGGATGAAGTCTGCTATTGGAATCGGGAC
GCTTCTTCAGGATGGACTTGGTGACACAATAAGAGTTTCGCTGACTGAGCCACCAGAAGAGGAGATTGATCCGTGTAAGAGATTGG
CCAACCTGGGGACAAAAGCTGCTGAGCTTCAACAAGGCGTTGCACCATTTGAAGAGAAGCATAGGCATTACTTTGATTTTCAGCGT
AGGACAGGTGATCTACCTGTACAAAAAGAGGGAGAAGAGGTTGACTACAGAAACGTCCTTCACCGTGATGGTTCTGTTTTGATGAC
GGTTTCTCTAGATCAACTGAAGGCACCTGAATTCCTCTACAGATCTCTCGCTACAAAGCTTGTCGTGGGGATGCCATTCAAGGATC
TGGCAACAGTTGATTCAATCTTACTAAGAGAGCTTCCACCTGTAGATGATCACGTTGCTCGTTTGGCTCTTAAACGGTTGATCGAT
GTGAGTATGGGAGTCATAGCTCCTTTATCAGAGCAACTCACGAAGCCATTGCCCAATGCAATGGTTCTTGTCAACCTCAAGGAACT
ATCTGGTGGTGCTTACAAGCTTATCCCTGAAGGTACACGCTTGGTTGTCTCTGTACGAGGTGATGAGCCATACGAGGAGCTTGAAG
TGCTCAAGAACATTGATGCTACTATGATTCTCCATGATGTACCCTTCAATGAAGACAAAGTTAGCAGAGTACACGCAGCTCGGAGA
CTATTCGAGTTCCTATCCGAGAATTCAGTTAATTTCCCCGTCATTCACCACATTAACTTCCCAACAGGGATTCACAGGGACGAACT
GGTGATCCACGCAGGGACGTACGCTGGAGCACTTCTAGTGGACGGACTTGGAGATGGTGTAATGCTGGAAGCACCTGATCAAGACT
TCGAGTTCCTTAGGAACACTTCTTTCAACTTGTTACAAGGCTGCAGGATGCGTAACACCAAGACGGAATATGTGTCGTGTCCGTCT
TGTGGAAGAACTCTGTTTGACTTGCAAGAAATCAGTGCTGAGATCAGAGAAAAGACTTCACATTTGCCTGGCGTTTCGATTGCAAT
AATGGGTTGCATTGTGAATGGACCTGGAGAAATGGCTGATGCTGATTTCGGTTATGTAGGCGGTTCTCCCGGGAAAATCGATCTTT
ACGTTGGAAAGACGGTGGTGAAGCGTGGGATTGCCATGTCGGGGGCAACTGATGCTCTGATCGGTCTGATCAAAGAACATGGTCGT
TGGGTGGACCCACCTGTGGCTGATGAGTAGATTTATTGTTGGCAAAGATGGATAAAAATGGATCATTACTTTCTGAAATTTGAGAG
GGAGAGAAGAAGATAATATGTGTATGTATGTATGTATATATACATATACCTATTTATTGTGCAATGCGTCATATTCAACAATGTCC
AAATCTCTAAACTGATAATAGTTCTGAGTTTTTAAATAATACAACAGAAGCAAGTTAGCAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002864694 hypothetical protein ARALYDRAFT_919295 [Arabidopsis lyrata subsp. lyrata] | 2813 | 0.0 |
| BAB09833 GcpE protein [Arabidopsis thaliana] | 2808 | 0.0 |
| AAL91150 GcpE protein [Arabidopsis thaliana] | 2808 | 0.0 |
| NP_851233 4-hydroxy-3-methylbut-2-enyl diphosphate synthase [Arabidopsis thaliana] | 2808 | 0.0 |
| AAM19840 AT5g60600/mup24_10 [Arabidopsis thaliana] | 2808 | 0.0 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q04YW2 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | 953 | 8e-102 |
| Q04UL2 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | 950 | 2e-101 |
| Q8F1H5 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | 940 | 2e-100 |
| Q72TR2 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | 928 | 6e-099 |
| Q6MD85 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | 714 | 4e-074 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LPQ4 AT5g60600/mup24_10 | 2808 | 0.0 |
| Q8RXG8 At5g60600 | 2808 | 0.0 |
| Q9FF59 GcpE protein | 2808 | 0.0 |
| Q8GZR7 GcpE | 2792 | 0.0 |
| A9ZN14 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | 2618 | 1e-293 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G60600.1 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4 iron, 4 sulfur cluster binding / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | 2809 | 0.0 |
| AT5G60600.2 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4 iron, 4 sulfur cluster binding / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | 2793 | 0.0 |
| AT5G60600.3 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE); 4 iron, 4 sulfur cluster binding / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | 2458 | 2e-277 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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