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Information for unigene UN16110
| FASTA Sequence |
| Unigene ID: UN16110 | Length: 1191 |
| SNP | GGATGTGCTCATCAAGGAGCCGAAGCGCTTCCTTATCTCCTTTACAAAGAAGATATTTTCGAACTCGAGTCTCTCACAGACTGCGA
TGGCGGCTTCACTCTCTTCCAATGCTCAGACCACACCGATTCTTCGATTCAGAGCCAGTGATTCCAAGTCCCTCGTCTCTCCCCCA
GGTTCGTGTTTGAGGGTCATGGCTTCGAACAATGCTTCATCTGCACGCGCAATTGCGTGTTCTTTAAGGAGCGACAATCCTTGGCT
CGGTGCGGGAGTTAAGCTCTCTGGTGGTGGCCCCGTTGTCAAGCGGTCACTACAGAAGAGAGTGGTGATAAGATCTGCAACTATTG
AAGAAATTGAAGCCGAGAAATCTGCTATTGAGAAAGACGTTAAATCAAAAATGGAGAGGACGATTGAAACGCTTAGGACTAGTTTC
AACTCCATAAGGACCGGGAGAGCCAATGTTGCTATGCTTGACAAGATTGAGGTTGAATACTATGGAAGTCCTGTAAGTCTGAAAAG
CATTGCCCAAATCAGTACCCCCGATGGCACTTCTCTTTTGCTCCAGCCTTATGACAAATCTAGCTTGAAGGCTATAGAAAAGGCCA
TTGTCAGTTCTGATCTTGGTGTCACTCCTAATAACGATGGTGATGTCATTCGCTTGTCCTTGCCTCCCCTCACTTCTGAGCGAAGA
AAGGAACTAACAAAGGTTGTAGCCAAACAGACTGAAGAAGGGAAGGTTGCACTGAGAAACATAAGGAGGGATGCCTTGAAATCTTA
TGATAAACTCGAGAAGGAGAAGAAGCTGTCAGAAGACAACGTGAAGGATTTGTCAAGCGATTTGCAGAAACTAATTGACACATACA
TGAAGAAGGTAGAGGAGCTCTGCAAACAGAAAGAGAAGGAATTGTTGAAGGTGTAACTGGCATGGGTGTTAGGCGACGATCTGGTA
AAATCCCCATATTTCCCATCTCCTTTTGCCGCTTTTACTACTTCATCTTTCATCGGAAAAAAATATGTTGTGTTTCTTGGGGTACA
AGAATGCCTTTGGGAATCGAGAGTAACTTTGTTTAAGTCTGTTTTCACTTCTTCAAGTGTTCCCTCTTTGTACAGCAAACTCTTGT
TAACTTTGTTTCCTGCTTCTGCCGTAACACATTTATTTTCTACGTTCCTAGAAATATCTTCCTCCTCTGTGCC
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002878502 hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp. lyrata] | 1131 | 2e-121 |
| NP_567141 ribosome-recycling factor [Arabidopsis thaliana] | 1126 | 9e-121 |
| CBI28691 unnamed protein product [Vitis vinifera] | 866 | 1e-090 |
| ABK96574 unknown [Populus trichocarpa x Populus deltoides] | 839 | 2e-087 |
| XP_002272648 PREDICTED: hypothetical protein [Vitis vinifera] | 838 | 2e-087 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9M1X0 Ribosome-recycling factor, chloroplastic | 1126 | 4e-122 |
| P82231 Ribosome-recycling factor, chloroplastic | 801 | 2e-084 |
| P37706 Ribosome-recycling factor, chloroplastic (Fragment) | 774 | 2e-081 |
| A2YMU2 Ribosome-recycling factor, chloroplastic | 771 | 5e-081 |
| A3BLC3 Ribosome-recycling factor, chloroplastic | 771 | 5e-081 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PJM1 Putative uncharacterized protein | 839 | 1e-087 |
| B9GSN2 Predicted protein | 837 | 2e-087 |
| C6TCH7 Putative uncharacterized protein | 815 | 7e-085 |
| B7FI72 Putative uncharacterized protein | 789 | 7e-082 |
| C5YLY5 Putative uncharacterized protein Sb07g001230 | 786 | 2e-081 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G63190.1 RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) | 1132 | 7e-124 |
| AT3G01800.1 ribosome recycling factor family protein / ribosome releasing factor family protein | 295 | 8e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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