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Information for unigene UN16297
| FASTA Sequence |
| Unigene ID: UN16297 | Length: 1227 |
| SNP | GGAGAGCATTGTACAATGGCGACCTTCACACTCAAATCCTTCACCGGACTCCGACAATCCTCACCAGATCAGACCAGCTTCATCTC
CCCTTCCAACATCGCCGTCGACATCGGCCGCACGCTCAAGGAGCACGAGTACATAGGGATGGTGAGGAGAGAGGTTCTTGACCAGT
ACCTGAGAGAGAGGGCAGAGAAGAGCGGAGCCACTGTGATCAACGGTCTCTTCTTGAAGATGGATCTACCGGAGAATTGGGACACC
CCGTACGTGTTGCATTACACGGAGTACGACGGGAAAACGGGAGCTACGGGACAGAAGAAGACGATGGAGGTTGACGCCGTCATCGG
AGCTGACGGAGCTAACTCTAGAGTTGCGAAGTCCATCGGCGCCGGAGATTACGACTACGCCATCGCTTTTCAGGAGAGAATTAGAA
TCCCAGATGATAAGATGACATACTACGAGGATCTAGCTGAGATGTACGTCGGAGATGACGTGTCACCCGATTTCTACGGATGGGTT
TTCCCGAAATGCGACCACGTAGCTGTCGGAACAGGCACTGTGACTCACAAAGGTGACATCAAGAAGTTCCAGCTCGCGACAAGAAA
CAGAGCCAAGGACAAGATTCTAGGAGGCAAAATCATCCGCGTCGAGGCTCACCCTATCCCGGAACACCCGCGGCCACGTAGGCTAT
CCAAGCGTGTGGCTCTTGTGGGTGATGCTGCAGGGTACGTGACTAAATGCTCTGGTGAAGGGATCTATTTCGCTGCAAAGAGTGGA
AGAATGTGTGCTGAAGCCATTGTTGAAGGCTCGCAGAATGGTAAGAAGATGATTGATGAGAGTGACTTGAGGAAGTACTTGGAGAA
ATGGGACAAGACATACTTGCCTACGTACAGGGTTCTTGATGTGTTGCAGAAAGTGTTTTACAGATCTAATCCGGCTAGAGAAGCGT
TTGTGGAGATGTGTAGCGATGAGTATGTTCAGAAGATGACGTTCGATAGTTATCTGTACAAGAGGGTTGCACCGGGTAGTCCATTG
GAGGATTTGAAGTTGGCTGTGAACACCATTGGGAGTGTGTTTAGAGCTAATGCTTTGAGGAGAGAGATTGAGAAGCTAAATGTTTA
AGACACAAATAAGAAGAGATTCTTTCTTGTCTTTTTTAATTTTAAAAGTATGTTTATGTTATCTGTTTATTGAGTGTTCGTTTTGC
ATAAATTACATGGACGTTGTTCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABI63587 geranylgeranyl reductase [Brassica rapa subsp. pekinensis] | 1788 | 2e-197 |
| CAA74372 geranylgeranyl reductase [Arabidopsis thaliana] | 1740 | 6e-192 |
| NP_177587 geranylgeranyl diphosphate reductase [Arabidopsis thaliana] | 1740 | 6e-192 |
| XP_002887543 hypothetical protein ARALYDRAFT_476582 [Arabidopsis lyrata subsp. lyrata] | 1740 | 6e-192 |
| AAN31803 putative geranylgeranyl reductase [Arabidopsis thaliana] | 1735 | 2e-191 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9CA67 Geranylgeranyl diphosphate reductase, chloroplastic | 1740 | 2e-193 |
| Q9ZS34 Geranylgeranyl diphosphate reductase, chloroplastic | 1557 | 4e-172 |
| Q6Z2T6 Geranylgeranyl diphosphate reductase, chloroplastic | 1420 | 3e-156 |
| Q55087 Geranylgeranyl diphosphate reductase | 1156 | 1e-125 |
| P26172 Geranylgeranyl diphosphate reductase | 369 | 2e-034 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q09JZ1 Geranylgeranyl reductase | 1788 | 1e-197 |
| A9PH25 Predicted protein | 1615 | 1e-177 |
| B7X936 Geranylgeranyl reductase | 1613 | 2e-177 |
| B9RLY0 Geranylgeranyl hydrogenase, putative | 1601 | 5e-176 |
| Q56GA3 Geranylgeranyl reductase | 1600 | 7e-176 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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