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Information for unigene UN16908
| FASTA Sequence |
| Unigene ID: UN16908 | Length: 1766 |
SSR | SNP | AAAACTCCCGCTCGGTCGAGCGGGTCATGTTCTAGTTTAGTATTATATAACAAACCATAAAATTATTACATCAACTATTACATAAA
TGAAAAGACAAATACTTGGACCAAGTTGACCATTACAAAACCACAACACAAGGCACTGCTACTACCTCCCTCTCAGACAAACATGT
CTAGACCCCAGGAAATTTGGAACCCAAACCCAACCCCCTTTTATTTCAACGTTATTTTATTGCTTGGCATACAAGCCAAGGAAGAC
TCATAGGTTACAAACCAAGAAGCATACATATAGAATCAACGACTTCAAATGAGAGACACACATACATAAGAGACTCTGAACAAGGT
CTAGAAAAAGAAAACAAGAAAGTGATAAAATTAAGAAGGAAAAAAGAAGAAGGAGAAAAGGTATCTTAGCGCTAAGACACCAAGAG
TTTATTACTGATAGTACATGAGCTGCTGATGCGCCGCAGCTACATTCTGAAAACCACCATCGTACATAGCCGCTGCACTTGCCCCA
GCTGCATTGACATGCCTTAGAGAATGCTGAGCCTGAGGGTGCATCTTGGCTAAAGCCAGTTGCCTCTCATAGGCTAAAAGGTCCAT
TGGGGACAGACCAGGGACTGCCACTGGCACTGGTGGCGGAAGCGGGTTTGAGGCTGTCCCTATTGGAGTTGGCTTGTTTCCCCATG
AACACTTTATCTGTCTGTTAAAGAGGAAAGGCTGAGAGTTGCCCATTTGAATAGCAAGAGCAGCCTCATCATGAGTGTTGTATCTC
ACAAAACCAAAGCCTTTGTCTCGCTGGACACGGACCTCTTCAATCACTCCAGCGCCAAGTGTATGGAACAGGCGGTGTAGATCAAG
CTGAGTTACTTCAGGAGCGAGGTTTCCTACATACACAGTGGTATACTGAGGATTGTTTTCAGGAGCTTCTTCGTTTGAGATTGAGA
TCTCTCTACCATCCTCTGACGAGCCGTTTGTGAGTTCAACGACACTTTTTCCATCAGAGCTATGTTTGTCCTCCCCAAAAGTAGCA
CCTTTTGTCGCCCAGTTGCATCTGATTTGTCTGCTACTTAACCATTTACCATTCATTTCATTTATGGCATTTTGAGCATCTGCTGA
TTGCGGAAGGAAACAAACCCAAAGCCTCTTGAGCGTCCAGTTTTCTGGTCCCACATTACTCTTGCATCCGAGCAAGTGTTAAAGGC
AGAAAAGCTTTCAAACAAAGCTGCATCAGTAACATCTGGACTGAGATCTCCAACAAAAATGTTGAAATGGCTTGATGTGTCTTCCC
TTTGACCAGTAGCATACGCCCAGTTAACTTTGATAGGCCGTCCAAACAGATGCCTTCCGTTAAGAGACATGATAGCCAAACCAGCA
GATCGTCGATCAAAGTAGTGAACAAATCCATATGATGACTTATCTTTTCTGATGAGTTTACAGCTCTCAACAGGGCCGGTGCTGGC
AAAAATCTCTTGAAGAAGAACCTCAGTGACCTGCGTATGGATGTTGCCAGCATACACACTGCGGCAAGTAGTGGGATCAAAACCAG
GAGGAAGGTTTCCACTTGGTAGAGGCTCCATCTGAGGAGGGGGAGGTGTTGTTGCATCAAAGCTTGCTGCATCATTGCTTGTTGCT
GCTGCTGCTGCTGTTTGAGCCTCGGATTCTGCATCTTTTTTTTTCTCACTGCGAGATGAGATGGAAAATATCTGTTTTGTTTCCCG
AGAAAAGACCTCTTTCCTCTTTTTAGCTTAGGGTTCGAAATCAACT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894477 hypothetical protein ARALYDRAFT_474538 [Arabidopsis lyrata subsp. lyrata] | 1041 | 1e-110 |
| NP_175810 oligouridylate-binding protein 1A [Arabidopsis thaliana] | 811 | 5e-084 |
| NP_849806 oligouridylate-binding protein 1A [Arabidopsis thaliana] | 796 | 3e-082 |
| NP_188026 RNA recognition motif-containing protein [Arabidopsis thaliana] | 775 | 7e-080 |
| AAM65229 oligouridylate binding protein, putative [Arabidopsis thaliana] | 775 | 7e-080 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q01085 Nucleolysin TIAR | 348 | 1e-031 |
| P32588 Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 | 274 | 4e-023 |
| P70318 Nucleolysin TIAR | 263 | 7e-022 |
| P31483 Nucleolysin TIA-1 isoform p40 | 155 | 2e-009 |
| P52912 Nucleolysin TIA-1 | 155 | 2e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3ECQ4 Putative uncharacterized protein At1g54080.2 | 1045 | 2e-111 |
| Q9SYG4 At1g54080/F15I1_16 | 1045 | 2e-111 |
| Q8LAP3 Oligouridylate binding protein, putative | 775 | 5e-080 |
| Q9LJH8 AT3g14100/MAG2_5 | 775 | 5e-080 |
| B3H4Q3 Uncharacterized protein At1g17370.2 | 772 | 1e-079 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G54080.2 oligouridylate-binding protein, putative | 1046 | 1e-113 |
| AT1G54080.1 oligouridylate-binding protein, putative | 1046 | 1e-113 |
| AT3G14100.1 oligouridylate-binding protein, putative | 941 | 2e-101 |
| AT1G17370.1 UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding | 829 | 1e-088 |
| AT1G17370.2 UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding | 810 | 2e-086 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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