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Information for unigene UN17021
| FASTA Sequence |
| Unigene ID: UN17021 | Length: 1363 |
| SNP | GGAACAAAACGAGAAATCTTGATATTTAAAGTCACTAGAAAGAAACAAAGTAGCACAAACCACAAGAAGACCACTAGGCTGCAATA
AAACGCTGACAAAAAAAAGATGCAATAGAACATGATGAAAGGCAACTAGGGTTCTAAGTTCAACCATTGCAAAAAAAAAAAAAACA
CATCAAAACACCAAAAGGGAAACAAAGCTTAGATAGATAGAGAAAGAGGAGTGTACTGATGACCCGTTTAGAATGAAACTACCCCA
CTACCTCACCGTAACGATGTCATCAATCTTCAAAATCATCCTTACGCATTCAGTTGCGAGAGTGATTGCGCTGGTGCTCACAAGCA
GAGGCTGCACCACGTTCTCCTCCAAGATATTAGTGATCTGCCCTTTCCTGACATTGATCCCAGAGTTGATTTCCCCTTGAGCATGC
TTGTTCCTGAGCTCAGTCACAATTGCAATAGGATTCAGACCTGCATTCTCAGCCAGCGTGTAAGGAATAACCTCCAGAGCTTCAGC
GAAAGACTTCACGCAGTAACCTTCCATCCCATGGAGCACCTTAGCCCAAGCACCTAGCTGCCTCGAGAGCTCAATCTCCGGCGCAC
CACCTCCCGCAATCAAAAACCTCTTGCTCACCAGACACCTGACAACACACAACGCATCGTGCAGACTCCTCTCGGCTTCATCAAGA
ACAAGCTGGTTAGAGCCACGGACGAGAACAGAGGTGGTTCTCCCCATGTCTTTAATCCCAGTGATCTTCAAAATCTTCCCATCTCC
AAGCGACGCTTCTTCAACGAGATCAGCAAAACCAAGCTTCTCAGCCCTAAAATGCTCAATGTTAGAAATCGGCAAGCAGTTCAACG
TCTTCGTCACGAACTCAATCTCATCCCTCTCCACATCCTTAATCACCATGATCTTCGCCTTAGCCAAATAGTGAAGCGACAGATCA
GTCACAGCATCTCTCAAAATACTCTTCTGGATCAACAACACATTACAACCAGTCGCCTTGATCTTCTTAATCATCCCCAAGATGTA
GTTCCTCTCTTCCTTCAAGATCCTATCCATCTGAGTATAATCAGAGACAACAATACTCTGCTCGATATCAGTCTTGGGAGGCGAGA
TCTGGAACTGAATCACAGCGATCTTCGCATTCTCCATCCTCGTAGGTCCACCTGCAGCGTGGCTAACCTTCTTTCCGTTTGTTGTC
TACGAAGGATTCGGTTTTGGATGCGCGAGGCCTCGATGCCATGGGTACCGTCGCCATTATAGAGTACGGAGGAGAGAGCTCAGATT
TGATTTGATCTCTGAAGGGAAAATGAGTTAGATCGGAGTTTACAGTGGAAAAGAGACGCTCTAGGGTTTACCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188447 TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] | 1518 | 4e-166 |
| AAM66101 chaperonin subunit, putative [Arabidopsis thaliana] | 1518 | 4e-166 |
| XP_002883118 hypothetical protein ARALYDRAFT_898177 [Arabidopsis lyrata subsp. lyrata] | 1510 | 3e-165 |
| ADL36837 TCP domain class transcription factor [Malus x domestica] | 1490 | 7e-163 |
| XP_002520408 chaperonin containing t-complex protein 1, delta subunit, tcpd, putative [Ricinus communis] | 1489 | 8e-163 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54CL2 T-complex protein 1 subunit delta | 1131 | 1e-122 |
| Q9NB32 T-complex protein 1 subunit delta | 1069 | 2e-115 |
| Q2T9X2 T-complex protein 1 subunit delta | 1043 | 2e-112 |
| P50991 T-complex protein 1 subunit delta | 1043 | 2e-112 |
| Q5R637 T-complex protein 1 subunit delta | 1043 | 2e-112 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L994 T-complex protein 1 subunit delta | 1518 | 3e-166 |
| Q9LV21 T-complex protein 1 subunit delta | 1518 | 3e-166 |
| B9S339 T-complex protein 1 subunit delta | 1489 | 6e-163 |
| Q70EL6 T-complex protein 1 subunit delta | 1482 | 4e-162 |
| A7VJA5 T-complex protein 1 subunit delta | 1480 | 6e-162 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G18190.1 chaperonin, putative | 1519 | 1e-168 |
| AT1G24510.1 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative | 397 | 1e-038 |
| AT1G24510.2 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative | 397 | 1e-038 |
| AT5G20890.1 chaperonin, putative | 390 | 9e-038 |
| AT3G11830.1 chaperonin, putative | 348 | 6e-033 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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