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Information for unigene UN17139
| FASTA Sequence |
| Unigene ID: UN17139 | Length: 1161 |
SSR | | TCTTGTCTTCTCGTCACTCATCTCACACCTTAAGCTTCCCTCAGCTTCAAACAATGGTGTTTGTGAAGCCATCCAAGTCGAACGCG
TACTTCAAGAGGTACCAAGTCAAGTTCAGGAGAAGGAGAGCTGGTAAGACTGACTACAGGGCGAGGATCCGTCTCATCAACCAGGA
CAAGAACAAGTACAACACTCCCAAGTACCGTTTTGTTGTCAGGTTCACCAACAAGGACATAGTCGCGCAGATTGTGTCCGCAAGCA
TTGCTGGTGACATTGTCAAGGCCTCTGCTTACGCGCATGAGTTGCCTCAGTATGGTCTCTCTGTTGGTCTTACCAACTACGCTGCT
GCTTACTGTACTGGGCTTCTTTTGGCTCGCCGTGTTCTGAAGATGTTGGAGATGGATGCAGAGTACGAGGGCAACCTTGAGGCTAC
CGGGGAGGACTTCTCCGTTGAGCCAACTGAGTCAAGGAGACCATTCCGTGCTCTTCTTGATGTTGGTCTCATCAGGACCACAACAG
GAAACCGTGTCTTCGGTGCACTCAAGGGAGCCTTGGACGGAGGACTTGATATCCCCCACAGTGACAAGAGATTCGCTGGTTTCAGC
AAGGAGAACAAGAACCTCGATGCTGAGATCCACAGGAACTACATCTATGGTGGTCACGTCTCGAACTACATGAAGATGTTGAACGA
GGATGAGCCAGAGAAGTTTCAGACTCACTTCAGTCAGTACTTGAAGAAGGGAGTTGATGCTGAGAAGATGGAGGAGTTGTACAAGA
AGGTTCATGCTGCCATCCGTGCTGACCCCAACCCTAAGAAGACTGTGAAACCTGCTCCCAAGGCACACAAGAGGTACAACTTGAAG
AAGTTGACCTATGAGGAGAGGAAGAACAAGTTGATCGAGAGAGTCAAGGCATTGAACGGAGCGGCTGGAGGTGATGATGATGATGA
GGACGACGAAGAGTAAAGCACTGGAAAGTTCAGCGTCTCCTGATGATGTCTCTTGTAGGAGCTTTTACTTTTTTTGCAAGACTTGA
GCATTAAACTTTTGTTTTCACTTTTAATTTCGTTTGAGGATTTTGAGTATGAGGATGCTATTTTCTTTGAAGAAGTTAAATCTTTT
TGACATTTTCATGAATTTGCAGTTTATAATCTTATGCCTACTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002870764 hypothetical protein ARALYDRAFT_916328 [Arabidopsis lyrata subsp. lyrata] | 1467 | 2e-160 |
| NP_566767 60S ribosomal protein L5-1 [Arabidopsis thaliana] | 1460 | 2e-159 |
| AAM64753 ribosomal protein, putative [Arabidopsis thaliana] | 1441 | 2e-157 |
| NP_198790 60S ribosomal protein L5-2 [Arabidopsis thaliana] | 1434 | 2e-156 |
| XP_002277820 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] | 1323 | 1e-143 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LBI1 60S ribosomal protein L5-1 | 1460 | 7e-161 |
| P49227 60S ribosomal protein L5-2 | 1434 | 7e-158 |
| Q6UNT2 60S ribosomal protein L5 | 1290 | 3e-141 |
| A2WXX3 60S ribosomal protein L5-1 | 1248 | 3e-136 |
| Q0JGY1 60S ribosomal protein L5-1 | 1244 | 7e-136 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B7FJX5 Putative uncharacterized protein | 1306 | 8e-142 |
| A9PFA8 Predicted protein | 1302 | 2e-141 |
| B9SFU0 Ribosomal protein L5, putative | 1298 | 6e-141 |
| C6TL04 Putative uncharacterized protein | 1285 | 2e-139 |
| B9IAZ4 Predicted protein | 1274 | 4e-138 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G25520.1 ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); 5S rRNA binding / structural constituent of ribosome | 1466 | 1e-162 |
| AT5G39740.1 60S ribosomal protein L5 (RPL5B) | 1440 | 1e-159 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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