Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN17651

FASTA Sequence
Unigene ID: UN17651Length: 1523  SNP
ACTTGAATCTCAATTACAAATCAAAGATCAAGACAGCCTACTTGTCGGATAAGAAAAACAGAGGATTTTTGTTATCACTTTTTGTG
TCGCCGGAGATAAAAAGACGATGGCGAGTGTGCCGGAGATAAAGATAGTGAGGAGCGAGAGCTTAGGGCATCGAAGTGAGGTGTCG
AGCCCGGAAGCTAAGCTAGGGATGCGTGTGGAAGATCTATGGGATGAGCAGAAACCACAGCTCAGCCCTAACGAGAAGCTCAACGC
ATGTTTCGAGAGCATCCCTGTCTCTGCTTTCCCTCTCTCCTCTGATTCACAAGACATCGAGTTGAGATCAGACACAAGCTTGGCTG
AAGCTGTTGAGACACTGTCGAAACTCAAGGTGTTGAGCGCTCCTGTTGTAGATGTTGACGCTCCTGAAGACGCCAGCTGGATTGAC
CGCTACATCGGTATTGTGGAGTTTCCAGGCATTGTTGTCTGGCTTTTGCATCAGTTGGACCCAACATCTCCAAGGAGCCCCGCTGT
TGCAGGTTCAAATGGAGTTTCTCATGACTTCACCGCCGATATCCTGGATAATGGAGATTCAGCTGTAACTTCTGGAAACTTCTTTG
AGGTCCTTACTTCTTCAGAGCTATACAAGAACACCAAGGTTCGAGATATCTCTGGAACATTCAGATGGGCACCTTTCCTTGCTCTG
CAGAAAGAGAACTCCTTTTTAACCATGCTGTTACTTCTTTCCAAGTACAAAATGAAGAGCATCCCAGTGGTTGATCTAGGGGAAGC
AAAGATTGAGAACATAATCACACAGTCAGGAGTTATCCATATGCTAGCAGAATGCGCTGGGCTTCACTGGTTTGAAGATTGGGGAG
TCAAAACTCTATCTGAAGTCGGTCTTCCCACTATGTCAAAAGATCATATCATAAAGATTTATGAAGATGAACCAGTTCTTCAGGCG
TTCAAGCTGATGAGGAGAAAGAGAATCGGAGGCTTACCCGTTGTTGAAAGACAAACTGAGAAGCCAGTAGGCAACATTAGCCTTAG
AGATGTCCACTTTCTCCTCACTGCACCAGAGATCTACCATGACTACAGGTCAATCACAACGAAGAACTTCTTAGTAGCGGTTAGGG
AGCATCTGGAGAAGCATGGAGATACCTCAGCACCTATCTTGAGTGGTGTCATTGCTTGCACTAAGAACCATACGTTGAAGGAACTG
ATTTTGATGCTAGACGCTGAGAAGATCCATAGGATGTATGTGGTGGATGATTCAGGTAACCTGGAAGGACTCATCACTCTCAGAGA
CATCATAGCAAGACTTGTACATGAGCCACCTGGCTATTTTGGTGATTTCTTTGACGGTGTTATGCCTCTACCTCAGAACTACCGAG
TCTGAGAAATGCTTTCTTTCTTTCTTTGTGTAGACTTGTCTTTGGTTTCGTTATGCTTCTCTGTATGTTTGTGCGAAAGTTCATGA
ATTTGTGTTTAAACGTTCTAACAGAAAATAATAAATGAAGAAAGAGTCAAGTCTTTGAGCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002875911 CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata]20562e-228
NP_190422 SNF1-related protein kinase regulatory subunit gamma 1 [Arabidopsis thaliana]20543e-228
AAM64867 unknown [Arabidopsis thaliana]20463e-227
XP_002321699 predicted protein [Populus trichocarpa]15642e-171
XP_002511194 AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]15444e-169

Swiss-Prot top hits (Blast detail)Scoree value
Q8LBB2 SNF1-related protein kinase regulatory subunit gamma 120541e-229

TrEMBL top hits (Blast detail)Scoree value
B9IFA2 Predicted protein15641e-171
B9RAG9 AMP-activated protein kinase, gamma regulatory subunit, putative15481e-169
B9I3Q6 Predicted protein15372e-168
A5AH78 Putative uncharacterized protein10462e-111
B7FIY7 Putative uncharacterized protein10353e-110

Arabidopsis top hits (Blast detail)Scoree value
AT3G48530.1 KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)20558e-231
AT1G69800.1 CBS domain-containing protein5395e-055
AT1G69800.2 CBS domain-containing protein5395e-055

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
96  24%
 
83  12%
 
105  20%
 
212  8%
 
63  12%
 
191  4%
 
182  8%
 
72  8%
 
111  4%

Unigene MembersMember information