 |
Information for unigene UN17656
| FASTA Sequence |
| Unigene ID: UN17656 | Length: 1028 |
| SNP | TAAACGGCAAAACGCGATTCAGTCTCATAGCAGCTCTGTTTTATACTACTAGAACAAAGTTACATTACACGATAGAGATGATGATG
AGAAAGGAGAAAATGATTTCTAAGAGGAGAAGGTATCGATGATGGTGGTGTGAAGCGGATCACTGAGGTGAGTAGCCCAATTGTTG
AGCGGACCTTTACCAGTCGCAGCGGCTTGAACAGCGAAGCCCAAGAAGGCGACCATGGCAAGACGTGCGTGCTTGATCTCAGCTAA
CTGAAGCTGAGCCATCTTCTCAGGGTCAGACGCTAAACCAAGCGGGTCGAAGAATTTGCCTCCAGGGTACAAACGCTTCTCAGAGT
CAAGTTCGGCGTTGCGCTGGAACTCAATGTAGCCGATCACTAACACCTCGATCCATATCAACGTCGAGATGGAGAAGGGTAGTGGC
TGCCCCAAGTAGGACGATCCATCCACAAGCTCCACCTTTCCGGCGTCTTGCCAGGTGACGCCGGTAAGCCATTCGACGGAGAGAGC
GCCGAGAGTGGCGAGCATGGCCCACCGTCCGTGAATCAGCTCGCATTCTCTGAACCTCTGGATTCCGAAGACCTCACTGTACGGCT
GAAACGGCGTCGATTTGGGGGCCGCCTCTTCGGTGCGTGTTCCGATCACGTCTCCGGCTAAGTTCTTAGCCAGATTCTGGTCTAGC
GAATCTATATCGAACTGGAGATACTCGGCCGGTTTACCTAAACCGAAAGGATCAAAACCGTAATCTCCAACAAGGGAACCGTCAAG
CCACTCGGGAGATTTGGCGCCTGGGTACCAGAGAGGCCTGTCGGAAGTCACGGTAGTCTTGGTCTTTTTGGGAGCCGCCTTCTTCT
TCCCGAACCCAAACCTGGCTGTGATTCTACCCGAACCGGAGTGGATATCGGGAACCACCCGAGTACCCATGATGGACGAAGCAGCG
GCGGCGGTAGGAGTAGCGGCCATCTTCGGCGGTGTTGCGTTTTGGTGATTTCAGGAGGTAGAAGGAACTCTCTGTCTTTTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ33665 unnamed protein product [Thellungiella halophila] | 1407 | 2e-153 |
| NP_195773 chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana] | 1382 | 1e-150 |
| AAM12979 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana] | 1379 | 3e-150 |
| AAK43851 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana] | 1376 | 7e-150 |
| XP_002873005 chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp. lyrata] | 1369 | 5e-149 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q07473 Chlorophyll a-b binding protein CP29.1, chloroplastic | 1382 | 6e-152 |
| Q9XF88 Chlorophyll a-b binding protein CP29.2, chloroplastic | 1352 | 2e-148 |
| Q9S7W1 Chlorophyll a-b binding protein CP29.3, chloroplastic | 1006 | 2e-108 |
| Q93WD2 Chlorophyll a-b binding protein CP29 | 632 | 6e-065 |
| P04777 Chlorophyll a-b binding protein 2/3, chloroplastic | 285 | 1e-024 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WW97 Lhcb4-protein | 1382 | 1e-150 |
| B7FIZ5 Putative uncharacterized protein | 1326 | 3e-144 |
| Q9XQB2 Chlorophyll a/b binding protein CP29 | 1305 | 8e-142 |
| B9SQ36 Chlorophyll A/B binding protein, putative | 1300 | 3e-141 |
| C1K5D1 Chloroplast chlorophyll A-B binding protein | 1279 | 9e-139 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G01530.1 chlorophyll A-B binding protein CP29 (LHCB4) | 1382 | 6e-153 |
| AT3G08940.2 LHCB4.2 (light harvesting complex PSII); chlorophyll binding | 1357 | 4e-150 |
| AT2G40100.1 LHCB4.3 (light harvesting complex PSII); chlorophyll binding | 1006 | 2e-109 |
| AT3G08940.1 LHCB4.2 (light harvesting complex PSII); chlorophyll binding | 773 | 2e-082 |
| AT1G29910.1 CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding | 285 | 9e-026 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
