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Information for unigene UN17703
| FASTA Sequence |
| Unigene ID: UN17703 | Length: 809 |
SSR | SNP | GGCCCCTCGTCGCTGCGTCTCTCTCCCGCAACCTTACAGATTCGTTTCTTTCCCCCATCGATCGGAGAGAGAGAGAATAATTCAAT
AAAGCGACCATGTTGGTGTACACTGATCTTCTCACCGGTGATGAGCTTCTGTCTGACTCTTTCCCTTACAAGGAGATTGAGAATGG
TATTCTCTGGGAAGTCGAAGGAAAGTGGACAACCCAGGGATCTGTAGAGGTTAACATTGGTGCCAACCCCTCTGCCGAAGAAGGTG
GTGAGGACGAGGGTGTTGACGACACTGTTCAGAAGGTTGTTGACATTGTCGACACCTTCAGGCTCCAGGAGCAGCCTACCTACGAC
AAGAAGGGGTTCATCGCCTATATCAAGAAGTACATCAAGCTTTTGACCCCCAAGCTCAACGAGGAACAGCAAGCAGAGTTCAAGAA
GGGTATTGAGGGAGCTACCAAGTACTTGCTTCCCAAGCTCAAGGACTTCCAGTTCTTTGTTGGGGAGAGCATGCACGATGACAGCA
CTGTGGTCTTTGCTTACTACAAGGAGGGTGCTACTAACCCTACATTTTTGTACTTCGGACATGGTTTGAAGGAGGTCAAGTGCTAA
GTGAGACAAGCTCTCGTTGGGGTACTGTGGTCGGTCGCAGCGACTCTATTTAAGTCTTATGTTTCGTTATATTGTTCTGTGTTTTT
CGTTACCTGATTACTTTTCTTTCTACTTCTCATCTCTGTTGCAAGATTCTTAAGTTATTAATCCGAGAACAATGGTTTTTTTAGTT
GAATTTTGGTTGGTCCTTTACTTTTTCACTTCTTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| Q944W6 RecName: Full=Translationally-controlled tumor protein homolog; Short=TCTP | 837 | 1e-087 |
| XP_002885160 hypothetical protein ARALYDRAFT_479130 [Arabidopsis lyrata subsp. lyrata] | 820 | 1e-085 |
| BAJ33998 unnamed protein product [Thellungiella halophila] | 814 | 7e-085 |
| NP_188286 translationally-controlled tumor protein-like protein [Arabidopsis thaliana] | 808 | 3e-084 |
| AAM66134 translationally controlled tumor protein-like protein [Arabidopsis thaliana] | 808 | 3e-084 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q944W6 Translationally-controlled tumor protein homolog | 837 | 7e-089 |
| P31265 Translationally-controlled tumor protein homolog | 808 | 2e-085 |
| Q2PS27 Translationally-controlled tumor protein homolog | 715 | 1e-074 |
| P35681 Translationally-controlled tumor protein homolog | 703 | 2e-073 |
| P50906 Translationally-controlled tumor protein homolog | 698 | 9e-073 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8VRK8 Translationally controlled tumor protein | 734 | 9e-076 |
| A6ZI67 Putative translationally controlled tumor protein | 728 | 4e-075 |
| B9N4J2 Predicted protein | 725 | 1e-074 |
| B9RT61 Translationally-controlled tumor protein, putative | 716 | 1e-073 |
| A9LC95 Translationally controlled tumor protein | 707 | 1e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G16640.1 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) | 809 | 1e-086 |
| AT3G05540.1 INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Translationally controlled tumour protein (InterPro:IPR018105), Translationally controlled tumour-associated TCTP (InterPro:IPR001983), Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323), Translationally controlled tumour protein, conserved site (InterPro:IPR018103), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIR:AT3G16640.1); Has 640 Blast hits to 640 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 110; Plants - 105; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | 640 | 4e-067 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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