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Information for unigene UN17924

FASTA Sequence
Unigene ID: UN17924Length: 1051  SNP
GGGCAGACCAATCACCACATAAATAAACCCATCAGAAAACGTTTTAACCTAAATCTCTGCGATCATGCCGGCCAGAAACATTGCCA
TCGGCGGAGTCCAAGAAGAAGTGACTCACCCTAGCGCACTTAGGGCGGCCCTCGCTGAGTTTATCTCGACTTTGATCTTTGTCTTC
GCCGGCTCAGGCTCAGGAATTGCTTTCAACAAGCTCACTGACAATGGAGCCACCACTCCTTCAGGCCTTGTCGCCGCTGCCTTAGC
TCATGCTTTCGGTCTCTTCGTCGCTGTTTCTGTCGGTGCCAACATCTCCGGTGGACACGTTAACCCTGCCGTTACCTTCGGTGCCT
TCCTCGGTGGAAACATCACTCTCCTCCGTGGCCTTCTCTATTGGATTGCTCAGCTTCTTGGCTCAGTCGCCGCTTGCTTCCTCCTT
CAATTCGCCACCGGTGGCTTGGCAGTTCCAGCTTTCGGTCTCTCTGCTGGAGTTGGAACCTTGAACGGTCTCGTCTTCGAGATCGT
GATGACCTTCGGGCTCGTCTACACCGTCTACGCCACAGCCATCGACCCCAAAAACGGTAGCCTCGGAACAATCGCACCAATCGCCA
TAGGTTTCATCGTCGGAGCTAACATCCTCGCGGGTGGAGCTTTCAGCGGAGCCTCCATGAACCCAGCCGTCGCTTTTGGACCAGCC
GTCGTGAGCTGGTCGTGGAGCAACCACTGGATTTACTGGGTTGGTCCTCTTGTCGGTGGTGGTCTCGCCGGAATCATCTACGACTT
TGTTTACATCATCGAAAACGGTCACGAGCAATTGCCCACCACTGATTACTGAAGACGCTGAAAATTAAATGTTTGTGATATGATTT
GTTTTTATTTCTCATCGTAATTGAATTTCTGTGTGGCCGTTGGATCTTCTTTTTAGATGAATCCTTGTCCGTTGATTTATGTTGTA
TTTGGGTTTGTTGTTGGAGTTGTAATTTTCATTGAAGGCTCTTTTAGATGAATGTGAATTATGCATGCTTCTACGTTATATTTTCT
TCTTGATTTCTTGTTTTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAD39372 tonoplast intrinsic protein [Brassica napus]12342e-133
BAA12711 VM23 [Raphanus sativus]12281e-132
XP_002876978 hypothetical protein ARALYDRAFT_484417 [Arabidopsis lyrata subsp. lyrata]12153e-131
NP_189283 aquaporin TIP1-2 [Arabidopsis thaliana]12136e-131
AAC62397 gamma tonoplast intrinsic protein 2 [Arabidopsis thaliana]11966e-129

Swiss-Prot top hits (Blast detail)Scoree value
Q41963 Aquaporin TIP1-212133e-132
P25818 Aquaporin TIP1-111148e-121
P50156 Probable aquaporin TIP1-110134e-109
O64964 Aquaporin TIP1-19751e-104
Q9FY14 Probable aquaporin TIP-type9751e-104

TrEMBL top hits (Blast detail)Scoree value
Q9XHG8 Tonoplast intrinsic protein12341e-133
O04119 VM2312287e-133
C0SVC9 Putative uncharacterized protein At3g26520 (Fragment)12134e-131
B6V686 Tonoplast intrinsic protein11193e-120
Q8H1Z5 Tonoplast intrinsic protein bobTIP26-211175e-120

Arabidopsis top hits (Blast detail)Scoree value
AT3G26520.1 TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel12142e-133
AT2G36830.1 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN); water channel11211e-122
AT4G01470.1 TIP1;3 (TONOPLAST INTRINSIC PROTEIN 1;3); urea transmembrane transporter/ water channel9354e-101
AT3G16240.1 DELTA-TIP; ammonia transporter/ methylammonium transmembrane transporter/ water channel8172e-087
AT5G47450.1 AtTIP2;3; ammonia transporter/ methylammonium transmembrane transporter/ water channel8002e-085

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
1022  29%
 
86  8%
 
92  3%
 
122  3%
 
66  8%
 
76  8%
 
152  3%
 
1912  16%
 
184  5%
 
209  12%
 
214  5%

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