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Information for unigene UN18174
FASTA Sequence |
Unigene ID: UN18174 | Length: 1670 |
| SNP | ATGGAAAATCATGCCTAGACTAGAAATTGCTCAACATATCCAACTAGAATCAGAAACATGTTGAACAAAAGAAAAAAGTATCGGAA
CATACAAAACGAATTTGTTTTTAAACGTACAATTTGTTACATTTCGAAAATGAGACACTGTTGTAATGGAATGATATTTGCATCTA
TCATTCAGCGCCGAAAAGCATTGCCTTCAGCTTCAGCTCCACGCTGTGAATAATAGCTTCTACGACGCACACTTTCTTCAATAGTG
GAGCTTCCACCTTTCTCAACTCCATACACACTTTTATTAGCGTCATCCAAAAAGCTTTTCCCTAACGAGTTTTTGTTCTTACTAGC
TTCCACAGCATCAGTTTCATCAGCTTTCTTCAACCTACTCCATCTCTGCTCCTCATGCACCTCTGCGTCCATCTGCATTTGCTTAA
ATCTAGCAGCTCTCTCTTCCTCTGATAATTTAGAGCCGCCACCCTTCCGGCGTCTATTCTGGAATCCATTGTCCTCTCTCGAGGGG
GGCTTGACATTGCTTAAGTCCTCTGTTTTCCTTTTTCTGTCCTCTTGATCATAACTCCTGAGATTTTCCCTTTCCAAACGGCTGCC
GCGGTAAGGAGAGTGGGTCCTATACTTCTCACTGGGTCGATCTTCTCTACGACTTTCTCTTCTTTTGGACTCATCATCCACCTCTG
ACCTCCGTCTCTCATAGTGCTTATCTTGACTTTCTCTTCTTTTGGACTCATCATCCAACTCTGACCTCCGTCTCTCGTAGTGCTTA
TCGTGACTTTCTCCTCTCCTTTTGGACTCATCCTCTAAGTCAGACCTTCGTCTTTCATAGTGCTTATCACGACTTTCCCTCTCGTA
GAGTTTGTCATGATCCCCCGATGCTCTGTAATGACGTGATTTTCTTCCAGTCTCTTCACCAGAATCTTCACCTGAATCAGAATGGT
GTCTGGATTGCTTACGATGCTTACGCTTTTTCTTGTGCTCCTTTGCATCTCCATCTTTACCCTTTCCCTTCTCCTCCACAGATTTG
CGAATAAGAGCCATCTTGACAGGGTTGTTCTTGATTCTGGCAAGAGCTTCTTGCTCGCGCTGCCTGATGAGAAGCAAAGGATCAGA
GTGAAGCTTCCTCCAAGAATCATTAGCAGAGGGAGTCTTATCCTCAAACAGCGCACCAGGAGCCGAAGGATCTGGCTTCTCACTAG
CATTATTACCAGCTTCAGCAGCATTGGCTAAAGGCTGCTCTTCTCTCTGAAACGACACACCTGAACCACTCGCACTCCCTTTCCCT
ACAGCTAATCCTGAATCATACAGAAACTCCAACCTCTCTTGTCTCGGGATGAGACCGGCTTGTTCCTGAAGAGCGCGAAACTCAGA
ACGCTCCCTCTCCTGGACGAGCTGGAGACGAAGCTCCTCGAGCTTTTTCTGCTCGGCCTCTTGTTTCTGCTCAGCCTTCCACACGT
TCTCGATGTTACGGAGACTCCCCGTATGCCATCCCTTCTTGTTCAAAAATTTCATCCCCATGATTGCTGCTCCTCTCTTTCTCTAT
CGCTTCGACAGATTTGTGTTGTCTTCACTTTTTTTTTGTCTTTCGTTTCGAATTGAAATCTCGTGGTGGTTGATGTAATGATCTCT
GATTTGCTCCGCCTCCGCCGACTCAATGATGAAGCC
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GenBank top hits (Blast detail) | Score | e value |
NP_566014 pre-mRNA splicing factor domain-containing protein [Arabidopsis thaliana] | 1213 | 1e-130 |
XP_002525246 expressed protein, putative [Ricinus communis] | 1001 | 4e-106 |
CBI17355 unnamed protein product [Vitis vinifera] | 775 | 7e-080 |
XP_002265487 PREDICTED: hypothetical protein [Vitis vinifera] | 756 | 1e-077 |
NP_001062154 Os08g0500200 [Oryza sativa Japonica Group] | 729 | 1e-074 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q4P6I3 Pre-mRNA-splicing factor CWC25 | 304 | 1e-026 |
Q9DBF7 Pre-mRNA-splicing factor CWC25 homolog | 298 | 6e-026 |
Q5KIP8 Pre-mRNA-splicing factor CWC25 | 294 | 2e-025 |
Q9NXE8 Pre-mRNA-splicing factor CWC25 homolog | 293 | 2e-025 |
Q8H0U8 DEAD-box ATP-dependent RNA helicase 42 | 194 | 7e-014 |
TrEMBL top hits (Blast detail) | Score | e value |
O64855 At2g44200/F6E13.34 | 1768 | 3e-195 |
B9SGX7 Expressed protein, putative | 1001 | 3e-106 |
Q6ZKL9 Os08g0500200 protein | 729 | 1e-074 |
A2YWP7 Putative uncharacterized protein | 724 | 4e-074 |
C5YJ81 Putative uncharacterized protein Sb07g028330 | 723 | 5e-074 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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