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Information for unigene UN18174

FASTA Sequence
Unigene ID: UN18174Length: 1670  SNP
ATGGAAAATCATGCCTAGACTAGAAATTGCTCAACATATCCAACTAGAATCAGAAACATGTTGAACAAAAGAAAAAAGTATCGGAA
CATACAAAACGAATTTGTTTTTAAACGTACAATTTGTTACATTTCGAAAATGAGACACTGTTGTAATGGAATGATATTTGCATCTA
TCATTCAGCGCCGAAAAGCATTGCCTTCAGCTTCAGCTCCACGCTGTGAATAATAGCTTCTACGACGCACACTTTCTTCAATAGTG
GAGCTTCCACCTTTCTCAACTCCATACACACTTTTATTAGCGTCATCCAAAAAGCTTTTCCCTAACGAGTTTTTGTTCTTACTAGC
TTCCACAGCATCAGTTTCATCAGCTTTCTTCAACCTACTCCATCTCTGCTCCTCATGCACCTCTGCGTCCATCTGCATTTGCTTAA
ATCTAGCAGCTCTCTCTTCCTCTGATAATTTAGAGCCGCCACCCTTCCGGCGTCTATTCTGGAATCCATTGTCCTCTCTCGAGGGG
GGCTTGACATTGCTTAAGTCCTCTGTTTTCCTTTTTCTGTCCTCTTGATCATAACTCCTGAGATTTTCCCTTTCCAAACGGCTGCC
GCGGTAAGGAGAGTGGGTCCTATACTTCTCACTGGGTCGATCTTCTCTACGACTTTCTCTTCTTTTGGACTCATCATCCACCTCTG
ACCTCCGTCTCTCATAGTGCTTATCTTGACTTTCTCTTCTTTTGGACTCATCATCCAACTCTGACCTCCGTCTCTCGTAGTGCTTA
TCGTGACTTTCTCCTCTCCTTTTGGACTCATCCTCTAAGTCAGACCTTCGTCTTTCATAGTGCTTATCACGACTTTCCCTCTCGTA
GAGTTTGTCATGATCCCCCGATGCTCTGTAATGACGTGATTTTCTTCCAGTCTCTTCACCAGAATCTTCACCTGAATCAGAATGGT
GTCTGGATTGCTTACGATGCTTACGCTTTTTCTTGTGCTCCTTTGCATCTCCATCTTTACCCTTTCCCTTCTCCTCCACAGATTTG
CGAATAAGAGCCATCTTGACAGGGTTGTTCTTGATTCTGGCAAGAGCTTCTTGCTCGCGCTGCCTGATGAGAAGCAAAGGATCAGA
GTGAAGCTTCCTCCAAGAATCATTAGCAGAGGGAGTCTTATCCTCAAACAGCGCACCAGGAGCCGAAGGATCTGGCTTCTCACTAG
CATTATTACCAGCTTCAGCAGCATTGGCTAAAGGCTGCTCTTCTCTCTGAAACGACACACCTGAACCACTCGCACTCCCTTTCCCT
ACAGCTAATCCTGAATCATACAGAAACTCCAACCTCTCTTGTCTCGGGATGAGACCGGCTTGTTCCTGAAGAGCGCGAAACTCAGA
ACGCTCCCTCTCCTGGACGAGCTGGAGACGAAGCTCCTCGAGCTTTTTCTGCTCGGCCTCTTGTTTCTGCTCAGCCTTCCACACGT
TCTCGATGTTACGGAGACTCCCCGTATGCCATCCCTTCTTGTTCAAAAATTTCATCCCCATGATTGCTGCTCCTCTCTTTCTCTAT
CGCTTCGACAGATTTGTGTTGTCTTCACTTTTTTTTTGTCTTTCGTTTCGAATTGAAATCTCGTGGTGGTTGATGTAATGATCTCT
GATTTGCTCCGCCTCCGCCGACTCAATGATGAAGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_566014 pre-mRNA splicing factor domain-containing protein [Arabidopsis thaliana]12131e-130
XP_002525246 expressed protein, putative [Ricinus communis]10014e-106
CBI17355 unnamed protein product [Vitis vinifera]7757e-080
XP_002265487 PREDICTED: hypothetical protein [Vitis vinifera]7561e-077
NP_001062154 Os08g0500200 [Oryza sativa Japonica Group]7291e-074

Swiss-Prot top hits (Blast detail)Scoree value
Q4P6I3 Pre-mRNA-splicing factor CWC253041e-026
Q9DBF7 Pre-mRNA-splicing factor CWC25 homolog2986e-026
Q5KIP8 Pre-mRNA-splicing factor CWC252942e-025
Q9NXE8 Pre-mRNA-splicing factor CWC25 homolog2932e-025
Q8H0U8 DEAD-box ATP-dependent RNA helicase 421947e-014

TrEMBL top hits (Blast detail)Scoree value
O64855 At2g44200/F6E13.3417683e-195
B9SGX7 Expressed protein, putative10013e-106
Q6ZKL9 Os08g0500200 protein7291e-074
A2YWP7 Putative uncharacterized protein7244e-074
C5YJ81 Putative uncharacterized protein Sb07g0283307235e-074

Arabidopsis top hits (Blast detail)Scoree value
AT2G44200.1 unknown protein17691e-197
AT2G44195.1 unknown protein2969e-027
AT1G20920.1 DEAD box RNA helicase, putative1946e-015
AT2G18540.1 cupin family protein1848e-014
AT5G23080.1 TGH (TOUGH); RNA binding / protein binding1175e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
202  13%
 
113  20%
 
103  20%
 
63  20%
 
82  13%
 
122  13%

Unigene MembersMember information