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Information for unigene UN18188

FASTA Sequence
Unigene ID: UN18188Length: 702 SSRSNP
GGGAGTCGGATTTGGTAAAGAGGAATTGAGCGAATAGGTTGATTGATTGATTGATTGAGAAAGTAGTAATGGGAAGCGCACCAGCA
CAGATTCCGACTAGCTTCGGCCATGAGCTTAGGGCTTGTCTTCGCTGCCGACTCGTCAAGACCTATGACCAGTTCAGGGACGCAGG
GTGCGAGAATTGTCCGTTCTTCAAGATGGAAGAGGATCACGAGCGTATCGTCGAAGTCACTACTCCTAATTTCAATGGCATAATAT
CTGTGATGGATCCAAGTAGAAGCTGGGCGGCTAGGTGGTTAAGAATCGGGAAGTTTGCTCCTGGTTGCTACACTCTCGCTGTCTCC
GAGCCACTCACAGAGGAAATGCAGCACATATGCCAAGAAGAGCGTGTACAATACGTTCCTCCGAAACGCATGTAAAAGCAAATACA
TCAAGACATAGAACGCAAGTAGTACTCTTTCTTATGTTTAGCTTCATGTTAACAATACCAGGTGCTTATATGTGTCTTCATGTTGA
CAGTTTCCAAGATGTCGTTGCTTCTTTGAGTACCTTAGGTTTCCATCTATGTAAGGTCGTTATGTATAACTTTTGAACTTCCCAGA
CCAAATGCTTCTCTGAGAGAAAACGTTTTGTTAGGAAAAGTGTAAAAACATCAGTACGAAAGCCAACTCTAAGCTTCTTGGAATTA
TAAAACGTTTTGTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ACF23020 ST5-18-3 [Eutrema halophilum]6246e-063
NP_568976 transcription elongation factor SPT4-2 [Arabidopsis thaliana]6174e-062
NP_568201 transcription elongation factor SPT4-1 [Arabidopsis thaliana]5744e-057
XP_002871347 positive transcription elongation factor/ zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]5701e-056
AAM63465 unknown [Arabidopsis thaliana]5691e-056

Swiss-Prot top hits (Blast detail)Scoree value
Q94C60 Transcription elongation factor SPT4 homolog 26172e-063
Q8LCQ3 Transcription elongation factor SPT4 homolog 15742e-058
Q6DGQ0 Transcription elongation factor SPT42157e-017
P63271 Transcription elongation factor SPT4 12076e-016
Q3SYX6 Transcription elongation factor SPT42076e-016

TrEMBL top hits (Blast detail)Scoree value
B4YYA3 ST5-18-36244e-063
B9RGK4 Suppressor of ty, putative5563e-055
C6T0C5 Putative uncharacterized protein5511e-054
A9PK54 Putative uncharacterized protein5492e-054
B9HUZ8 Predicted protein5492e-054

Arabidopsis top hits (Blast detail)Scoree value
AT5G63670.1 SPT42 (SPT4 HOMOLOG 2); positive transcription elongation factor/ zinc ion binding6181e-064
AT5G08565.1 positive transcription elongation factor/ zinc ion binding5751e-059

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
114  21%
 
123  16%
 
82  11%
 
63  16%
 
102  11%
 
73  16%
 
92  11%

Unigene MembersMember information