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Information for unigene UN18725
| FASTA Sequence |
| Unigene ID: UN18725 | Length: 1474 |
| SNP | CAAAAACAAGATTATATTTGTATTTCAAACACAACACAACTCTTGCCCTTCTCTTACAATAATTTTCTTGGTGGAAACATTGTTCG
ATTATTTTCATTACAATGAAGAGATCAAACACGCTGATATATGATAATGCGCTTCAAGGTGAGGGGGCCACCATGGGCTTAAAAGC
ACTAGAGGAGGAAGAAGATATGTGAGAATACCCACAAGGAAGAAAACTATGAAACCATGCGTGAGGACAGTAGTACTTAGGTTTGA
CAAAGAACTCCGCACATTCTTCAAGAGATCTTTGTCCTGGGAAGAAAGGAATACAGTTATTCCTAACGTTAAGAACACCTCTTTCA
ACCAAAATCTTACACCAAGGCCCCACGTGTGTGAAATAGTTATCAGACAAAGATAAGTTGACAAGATTATCCCGGAGGAGCATGCA
CACTGCCTCTGGGATTGCCCCAAACAAGAGATTCCCAGCAAAGTTGAGCTGCTCCACATTCTCTAGACACGTAAGTGAAAGGGGTA
AAGGACCCGTGAGCTTGTTTCCACCAATATCAATAACTGATGCTCCCTTGAGTAATCCGATTTCGTAAGGGATACAACCCGTAAAG
TCGTTATTCAAGAAGAGCACCTCTGTTAACATTGTCATAGATCTTAGGATGCTTCTCGGGAGTGGACCGGTGAACTTATTTTCTGC
TAAAGTTAAAAAAAGGAGGTGACTATCGCCAGGTATCTCGGGGAGGCTCGCAGTAAAGGTGTTGTCATTAATGAAGAGAACGTCGA
GGTTCTGACCAAAGATTTGTGGTGGGATTGAACCGGAGAAAGAGTTGAAACGGATGTCAAGAAATGTCAAACCGCGCATGCCAACT
ACCGCGGTCGGAAACTGACCGGTGAATTTATTGTTGCTGATGTCGAGTTCATAGAGATACTTGAGATTAACGATCTTTGAAGGGAT
GGTACCACCAAAGTTGTTTGAATTTACATGAAACAGAGCTAAATCTGGGAGTTGATCGATGAATCCTTCAATGGAGGGAGCAAATA
GCTGGAAACCATTGAAATCGATGGAAGCGACAGTGACTGCTGTTTTGTTGTCCGGAGGATTGTCACAGTGGAAGCCTCTGTAACTG
CAAATGTCTGAACCTATCCATGTCTGTGTTACCTTAAACGGGTCGAGAGTTATGAGTGACTTGAATCCCTGGATCACTGGGTACAC
CACTTCAAGCCTTTTGTCAAGAAAAGTGAGTCTCTCTTCTTCCCTGCTTCTTGTCTCTTGTAAACCAATGACGCTAACTAGGAACA
TAGCCAAAAGAAATGGATTCTTCATCTTTGCAGCAGAAGGATATGTGTTAGAAATGAAAGAGATGACTCAAACAAATTTCTTCGAC
AATTGTCTTAGTTTTTATTCTGGTATCATGTTTATAAATTTCTCGTAACAGGCTTAGACTATCATAGTGTACTATTTTGTATTGTA
GGGTGACTAGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_849339 Leucine-rich repeat-containing protein [Arabidopsis thaliana] | 1703 | 1e-187 |
| XP_002874478 leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] | 1696 | 9e-187 |
| XP_002510174 serine-threonine protein kinase, plant-type, putative [Ricinus communis] | 1252 | 3e-135 |
| ABD32635 Leucine-rich repeat, plant specific [Medicago truncatula] | 1193 | 2e-128 |
| XP_002327173 predicted protein [Populus trichocarpa] | 1185 | 2e-127 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8W3M4 Uncharacterized protein At4g06744 | 1703 | 6e-189 |
| Q9LHF1 Leucine-rich repeat extensin-like protein 4 | 705 | 3e-073 |
| Q9T0K5 Leucine-rich repeat extensin-like protein 3 | 687 | 4e-071 |
| Q9SN46 Leucine-rich repeat extensin-like protein 5 | 655 | 2e-067 |
| O48809 Leucine-rich repeat extensin-like protein 2 | 637 | 2e-065 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9R781 Serine-threonine protein kinase, plant-type, putative | 1252 | 2e-135 |
| Q2HTP6 Leucine-rich repeat, plant specific | 1193 | 1e-128 |
| B9MVU9 Predicted protein | 1185 | 1e-127 |
| B9RYC6 Serine-threonine protein kinase, plant-type, putative | 1159 | 1e-124 |
| B9GHC0 Predicted protein (Fragment) | 1078 | 3e-115 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G06744.1 leucine-rich repeat family protein / extensin family protein | 1704 | 4e-190 |
| AT3G19320.1 leucine-rich repeat family protein | 828 | 2e-088 |
| AT1G49750.1 leucine-rich repeat family protein | 821 | 1e-087 |
| AT3G24480.1 leucine-rich repeat family protein / extensin family protein | 705 | 3e-074 |
| AT4G13340.1 leucine-rich repeat family protein / extensin family protein | 687 | 3e-072 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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