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Information for unigene UN19058

FASTA Sequence
Unigene ID: UN19058Length: 1202  SNP
GATGCATAGAAGCTGTTGTTACCGGTTCCATGGTGCAATATATTCCATTGTTAGAATTCTATGGAGGAGGTCTTCCTTTGATTTCA
TCTTGGTACGGCAGCTCTGAATGTTTCATTGGGATTAATGTCGATCCTCTAAGCAAGCCTTGTGATGTGTCCTATACCATTGTTCC
AAGTATGGCGTACTTCGAGTTCTTAGAGGTCGAGAAGGACCATCAAGAAACTGGTCATAATCTCACAAAGAACCCTGTGGTCGTTG
ATCTTGCCGATGTTAAAATTGGACATGATTATGAACTTATTATCACAACATTCTCTGGTTTGTATAGGTACCGCTTGGGGGATGTT
TTAAGAGTGACTGGTTTCTACAACAATGCCCCACAATTTTATTTTGTAGGAAGACAAAAAGTTGTTCTGAGCATGGACATTGATAA
GACGTACGAAGAAGATTTGCACAAGGCCGTGACAAGCGCGACGCACTTGCTCGAGCCACATGACCTCATGCTCATCGATTTCACTA
GCCGTGTGGACTCCTCCACGTTTCCAGGTCACTACGTGATCTATTGGGAACTCGGGAGGAAACTCAAGGACGCGAAAGTCGAGCCC
CACCGCCATGTCTTGGAAGAATGCTGCTTCACCATTGAGAAGTCTCTCAACTCTGTGTACAGAAAGTTACGTAAGAATGATGGTAC
CATTGGACCCCTTGAGATTAAGGTTGTTAGGCGTGGCGCTTTTGACGAGCTCATGAATTTGTTCCTGTCTCGAGGCTCTTCTGTGA
GTCAGTACAAGACCCCGAGGTCGGTGAGTAGTGAAGAAGCTTTTAAGATATTGGAAGAGGCAGTTGTTTCCGAGTTTCTTAGCACG
AAAACTCCGTCGTGGGAGCCACGTGAGATGCACTCTGGCCGATAAATCCAGTCTCGTAATGTGGACAGTATGAGCCTTCGCTTATA
ATTACATATGAATAAGATCGCTATGTAGTATGTACTTTATATCACATAAAAGACACGATTACATAATCGAATATATAAGTCTATTA
CAATCGTCAAGTGATGTTTTATAAGTCTTTCACGTGCCTATATAATGAAGACCTGCTCGTATGATATGAAGATGTGTTGAACTAGA
ACAGCTTATTCAGCACTAGCAGCTAATGGGTGCTGGGCCGCTGGCTACTGAATGTCATTTGTAAACACCAAAGGTCTAAAGTGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002871564 auxin-responsive GH3 family protein [Arabidopsis lyrata subsp. lyrata]12593e-136
NP_196841 auxin-responsive GH3 family protein [Arabidopsis thaliana]12584e-136
CAB87144 auxin reponsive-like protein [Arabidopsis thaliana]12584e-136
NP_196840 auxin-responsive GH3 family protein [Arabidopsis thaliana]12405e-134
NP_001190301 auxin-responsive GH3 family protein [Arabidopsis thaliana]12405e-134

Swiss-Prot top hits (Blast detail)Scoree value
P0C0M3 Probable indole-3-acetic acid-amido synthetase GH3.118083e-085
Q9LQ68 Indole-3-acetic acid-amido synthetase GH3.47984e-084
Q8LQM5 Probable indole-3-acetic acid-amido synthetase GH3.17861e-082
Q60EJ6 Probable indole-3-acetic acid-amido synthetase GH3.47716e-081
O22190 Indole-3-acetic acid-amido synthetase GH3.37662e-080

TrEMBL top hits (Blast detail)Scoree value
Q8GZ29 At5g1337012583e-136
Q9LYR9 Auxin reponsive-like protein12583e-136
Q9LYS0 Auxin reponsive-like protein12404e-134
Q9LYR8 Auxin reponsive-like protein12386e-134
Q9LYU1 Auxin-responsive GH3 family protein11822e-127

Arabidopsis top hits (Blast detail)Scoree value
AT5G13370.1 auxin-responsive GH3 family protein12591e-138
AT5G13360.1 auxin-responsive GH3 family protein12412e-136
AT5G13360.2 auxin-responsive GH3 family protein12412e-136
AT5G13380.1 auxin-responsive GH3 family protein12393e-136
AT5G13350.1 auxin-responsive GH3 family protein11821e-129

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  9%
 
111  4%
 
68  35%
 
182  9%
 
86  26%
 
121  4%
 
73  13%

Unigene MembersMember information