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Information for unigene UN19097

FASTA Sequence
Unigene ID: UN19097Length: 857  SNP
GGGTTGATACTCCTCAACACACACTCGAATCTGTTTCTCCTTCGACTCCTCCTCTGTGACCGTCTCCGCCGCTCAAAATCTCCCCC
TAACTCGCTAACTACACCGTCTCCGCTTTTGGCTTGTGGAAGAAAAAATCAGAGAATGGCCAAGTACTATGACATTGACGACATAC
TTACAGAGGAAGAGTTTGCTCCTGTGTTGTTCCATAAGCCAGCAAATGGAGTGACTATTGATCCAAGTGCTGAGACAAACTCTGTT
GAGCAAGGCGCTAAAGTGGAGTTACCCTTCTGGCTTGCTCACGAGTTGCATTTGAGACAAGCTGTCTCCATTAACCTTCCTGCCTG
TTTCGACCAGAAGACGAGGTTGGAGATACAGGCTGATGCAGCATGTGTGGATCTTAGATCACGATGTCCTTACTTCTACGAGTTGG
GTTGCAAGTTACAGCCCTTAGTTGCAGATAGAACGATTGGGATCTTGCTGTCGACTGCGTTTAAGATCAGATACAAGGAGAGGCTG
ACAAAAGTTTTCACCGCAACTCATCTAACAGCTTCCAAGTTCTTGCCATTCTTGACTATTGAAGAAGCAAACTTGTACGAAGCAGC
TAACTTGTCTATGACAGCCTTCAAGAAATGGAGAACAGGAGGTCCTCGTTTCCAGAGAGCTTCGATACTCGGAAGAAAACGCAAGG
AATCTTGATTAACTTTGACGACCCTAAAAACGCTTTATTGCTTCATCATCTTTGTTTGTATCTTTATTGCCCTGAGTTTGGTCTGT
ATCTCCTTAACACGTACATGAAAATCATATTTCACTAGGGGTGGACAAGAATGCATATCAGAATCTGTGGAGGTATTTTCATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002878035 hypothetical protein ARALYDRAFT_485976 [Arabidopsis lyrata subsp. lyrata]8407e-088
NP_001078297 GINS complex protein [Arabidopsis thaliana]8381e-087
ABK28336 unknown [Arabidopsis thaliana]8381e-087
XP_002513028 conserved hypothetical protein [Ricinus communis]6883e-070
XP_002316214 predicted protein [Populus trichocarpa]6695e-068

Swiss-Prot top hits (Blast detail)Scoree value
Q0UPV4 DNA replication complex GINS protein PSF31908e-014
Q4WQ54 DNA replication complex GINS protein psf31559e-010
Q9UTC3 DNA replication complex GINS protein psf31396e-008
Q5KAM9 DNA replication complex GINS protein PSF31299e-007

TrEMBL top hits (Blast detail)Scoree value
A0MDR5 Putative uncharacterized protein (Fragment)8389e-088
Q6NNH6 At1g190808389e-088
B9RG76 Putative uncharacterized protein6882e-070
B9HSP2 Predicted protein6693e-068
Q9M2T0 Putative uncharacterized protein T22E16.1506685e-068

Arabidopsis top hits (Blast detail)Scoree value
AT1G19080.1 TTN10 (TITAN 10)8385e-090
AT3G55490.1 CONTAINS InterPro DOMAIN/s: GINS complex, Psf3 component (InterPro:IPR010492); BEST Arabidopsis thaliana protein match is: TTN10 (TITAN 10) (TAIR:AT1G19080.1); Has 224 Blast hits to 224 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 76; Plants - 22; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).8385e-090

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  14%
 
92  14%
 
84  29%
 
104  29%
 
111  7%
 
61  7%

Unigene MembersMember information