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Information for unigene UN19443
| FASTA Sequence |
| Unigene ID: UN19443 | Length: 1445 |
| SNP | TACGCTTATGCGCTGGTTTTTCATGAATTTTGAGAAATTGCCAAAACCACACAAATCTGATTTGACTATAATGTAATGGTTTGGTT
TTATTGTAAAAATTGTTACGACAGGAAGAACTCAAGGGAAAAACAAAACTTCGAACAAAATGAAATAAAGTTACTAAGAAAAAAAC
AAATGAGAATAGTAACGGCTAACTCCAAATCTGCTTCAGGAACATAAACAGAAAACGAGAGAAGGAAGAAACACAGGTCCTTGAGA
GAAGTCTCTGCCTCACTCAAAGATGATTTGAGATCCCCATCTGAAAAAGCTTTTAAGCCTCAAACCAATAAATAAAACACAGACCA
GAGATAGGAACGGAACCATGATGGGGATACTCTTTATCGGTTCTATTCGTTGGCTCTCTCCGAGGCTGAATCAACCTTCTGTTTTA
TCATGGTCTCAGCTTGTTGGATTGCTCTCTGTGACCCTGTGATACTCACTTTCCTATCAGTGGTTCCAGACATGAAATCACCTCGG
TCTGATATTTTAATTCGGGCACCGGTCATCTGAGTGATTTCCATGATGTTTCTTCCCCCACGGCCAAGGACCAATCCTATATGCTC
ATCCGCCACACCAATTGTCACCGTGGTGCTAGCTTCTTCCTTGTGGTTCTGATACCTGCCTCCAGAACCGTTGGGAGCGTAGTTGG
GTGCATAGTTAACCGCATTGTATCCCGCTGCATACGAATATGGGGAATGTACATTCTGGGAGTAATGATCGTCCTCGGTAAGCTTA
GCCAAAATCAAATCAATCGCCCGCATCTGCTCTTCGATGGTTCCAGATAATGTCACTAGCCTGTCACTCAACCCATAGTAGGTATT
ATCCAGAGGGGATATCTTAATCCCAGCTTTAGATTCCTCAATGAATGACTTGATGGTGGCTCCTCCTTTTCCAATAATGCCTCCAC
AAGAACTGTTAGGGACCACAAGCCTTAGTCTTCTCCTAGGCTCAACATCACTTCCCTCTTCAGCATGAAGCTCACTGTGCAATTTA
TCAAGGATAAGTTCCAGTCCACTGACAACTTCTTTAATGGAGCCAGAAATCATAATGATTCTATCATTCGTCGAGCCTCCTTTGCC
TATGACGGAACCAGCCGCCGCATTGGATACAAGAAACCGTATGTGTGTTGGCTTCTCAGCATAGTCAGCTTCCGAATCATCGTGAG
GTTCCGGGGATCTCTTGGTAAGCTCTTCAGGGGAAGCTGCTGCCGCATATGAGTCGGTGGAGGCCATTTTTTCCGTTGTTCTCTCG
CACAATTTCGAATCTCCTCCTTTTCGAGCTTGTGGATTTCTGAATCTGAGAGAAGAGTTTGAAGTCTCTCGATGTGCTCTCTCGTC
TGGGATTCCTCCGCTTCGTCGTCTTTGTCGCCGAGCGGTTTGTGAAGTGAAGGAGGAAGGTGGCTCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_196063 binding to TOMV RNA 1L (long form) protein [Arabidopsis thaliana] | 1105 | 3e-118 |
| CBI31382 unnamed protein product [Vitis vinifera] | 869 | 7e-091 |
| XP_002532622 Far upstream element-binding protein, putative [Ricinus communis] | 846 | 3e-088 |
| ABK95306 unknown [Populus trichocarpa] | 803 | 3e-083 |
| NP_850764 binding to TOMV RNA 1L (long form) protein [Arabidopsis thaliana] | 628 | 6e-063 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9UNW9 RNA-binding protein Nova-2 | 180 | 2e-012 |
| Q9JKN6 RNA-binding protein Nova-1 | 172 | 2e-011 |
| P51513 RNA-binding protein Nova-1 | 170 | 3e-011 |
| Q2PFW9 RNA-binding protein Nova-1 | 170 | 3e-011 |
| Q80WA4 RNA-binding protein Nova-1 (Fragment) | 170 | 3e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LZ82 AT5g04430/T32M21_30 | 1105 | 2e-118 |
| B9T303 Far upstream element-binding protein, putative | 846 | 2e-088 |
| A9PG03 Putative uncharacterized protein | 803 | 2e-083 |
| Q3E9L7 Putative uncharacterized protein At5g04430.2 | 628 | 4e-063 |
| B9DH67 AT5G04430 protein (Fragment) | 496 | 9e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G04430.1 BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)); nucleic acid binding / single-stranded RNA binding | 1106 | 9e-121 |
| AT5G04430.2 BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)); nucleic acid binding | 628 | 2e-065 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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