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Information for unigene UN19608
| FASTA Sequence |
| Unigene ID: UN19608 | Length: 1549 |
| SNP | GGAAACTACTTCAAACCGACAAGATGGAGAAGATGAAAGTGGTGGCTTTTGTTATGCTCATCTCTCTTCTTCAGCTTTCTCAGGTA
CTCGCAGATGCATCTTCACCCAGCAACGGTGAAACTTCCTCTCTTTCTCAGATTCAGATGAACGACGAGAACCAAGAGGAGGCTTT
TAAGAGAACATATCACCGTCCACGATTCAATTGTGGGTCTGCCTGCGCTAGGAGATGCAGAGAGACGTCGAGGAAGAAAGTGTGTT
ACAGAGCTTGTGGAAGTTGCTGCGCAAAATGTCAGTGCGTACCGCCGGGGACCTCAGGCAACACAGCATCATGTCCTTGCTACGCT
AATCTCCGTACACATGGCAATAAGCTCAAGTGTCCTTGAGACTACAAAAAAACCTCTATGTTACATGCTCTGATCATCTTCTAGCT
AATAAACTATATGTTTGCTTCTATTGTATCTTGTGTGAGCTTATATATTTCCCATTATGTTGCCATTATTCAAAACATTGTAATCG
ATTTCCGAATAATAAGATGAGTGATTTTATTGTTTAAGAGTAAACAAAAGCAGGAAACAAGTTTTCATATTCATAATAGTAACACA
AAATGTCCTTACAAAATAACATCACCGTTTATTGGTTTCTTCGTCACCGTTTCTTGGACTTAACCGCCACAACGTCTTTATAGAGC
TTAACGCGATCCTTCAACGCATCTCTTCGAGGCCGAGCCACCTTGTTGTTCGGATCAAACAACAAAACCTCTTCAAACGCTTTCAA
CGCCAAAGGCAGCTCCTTCTTCTTCTCGTAAGCATCTCCAAGGTTGTTCCAAGCCGTTACATAACCAGGCTGAATCTTCACCGCCA
TCTCAAACTGAGCGATTCCTTTGTCCAGTTTGTCCTCTCGGACGTAACTCACTCCGAGAGCGTTGTAGACCTGAGCAAGATCTTGA
TCGTCACCGTCCCATTTCTGGATGGCTTGAAGCAAGAACTTGTTGGCTGCTGGATAAAATTTGCGTCTCAGCATCACTGCACCGAG
CTCAAAGAGCTCTGTTGCACTTGCATCCCCGCTCCTTACTTGTTCCTGTAGTTCTTTGGCAGAGAGGTCAAGTTCTCTGCGGACAA
GTACTTGGCGGATGACATAGAAAGTACCAACTCCGAGCAAACCAAGTAGCAACAGCAAGTAAGAAAGCTGAATCCCTAGTTCAAAC
AACTCTCCAACTTCGTAAATAGGTTCAGGCTTCACGGTTTCTGACGCTGCTGCCAGCTGTGGATAAGCAGAGACCATCAACAAGCT
CTGACCCAGCAGAAAGGTAGATCCTTTGCTCGGTAGCTTCTTCAGAAGCGGTAAGCCTCTAGCAGCAAGTTCTGCAGATCGAAAAG
CCAAAATCCTGCCATGTATCTGTAAAGATATCGTTTTGGGATGGAGCTTGAGCGACAGAGGAGAAGAAGGGAGAATCTGAGAGTGA
TGGAGATAGAGGCGGTGAATGGGAGGAGACGATGGAGATAGCGTATGGAGTAGCGTGCTCGATGGGATTACTCGGAAAGTCTGAAA
A
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002893245 tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | 1270 | 3e-137 |
| NP_564178 tetratricopeptide repeat-containing protein [Arabidopsis thaliana] | 1263 | 2e-136 |
| NP_850950 tetratricopeptide repeat-containing protein [Arabidopsis thaliana] | 1235 | 3e-133 |
| AAM61445 unknown [Arabidopsis thaliana] | 1212 | 1e-130 |
| AAC25516 Contains similarity to ycf37 gene product gb|1001425 from Synechocystis sp. genome gb|D63999. ESTs gb|T43026, gb|R64902, gb|Z18169 and gb|N37374 come from this gene [Arabidopsis thaliana] | 1029 | 2e-109 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q93X17 Snakin-2 | 282 | 4e-024 |
| P46689 Gibberellin-regulated protein 1 | 251 | 2e-020 |
| P46688 Gibberellin-regulated protein 2 | 251 | 2e-020 |
| P46687 Gibberellin-regulated protein 3 | 225 | 2e-017 |
| P27057 Protein GAST1 | 185 | 7e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94EJ1 At1g22700/T22J18_13 | 1263 | 1e-136 |
| Q3ED72 AT1G22700 protein | 1235 | 2e-133 |
| Q8LFF4 Putative uncharacterized protein | 1212 | 9e-131 |
| O80551 T22J18.13 protein | 1029 | 2e-109 |
| B9SLH4 Tetratricopeptide repeat protein, tpr, putative | 889 | 3e-093 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G22700.1 tetratricopeptide repeat (TPR)-containing protein | 1265 | 3e-139 |
| AT1G22700.2 tetratricopeptide repeat (TPR)-containing protein | 1264 | 5e-139 |
| AT1G22700.3 tetratricopeptide repeat (TPR)-containing protein | 1015 | 3e-110 |
| AT1G22690.1 gibberellin-responsive protein, putative | 499 | 2e-050 |
| AT1G75750.1 GASA1 (GAST1 PROTEIN HOMOLOG 1) | 252 | 1e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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