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Information for unigene UN19757
FASTA Sequence |
Unigene ID: UN19757 | Length: 1404 |
| SNP | GAACGTTGTGCTTCTTGCATTCAATAACTCAAATCAACAGCGACTGTCACTGTATGGGGATTTGATAGAGAAAATGCATTTTTATT
TACAATACAAACTTCATCATCCTTTTTAAAAAGCAGAGAGAAATAGGTAGCCAATCAAAGAGTCCTCGCTCACACAAATCACCAGC
GTTAGTTAATTTATTAAAACAAGAGCTCGCTGGTTTAACTAATGGGCGGCGGGTGAGACGGTGGCTGTAACGGTGGAGACAAGACT
GTCAACGCCACAAACGTTACGGCCTCTGCAGATTTTGTAAAAACCATTCTCACCCCAAGTCTCTCCCCACGAGTTCTTAATAATCC
AGTAAGGCTTCTCCTTGAACCTAGCCGGAGCGTAACCAGCCGATCCATAACCCACCAATAAGACACCGTGGTTGAGCCTCCTCATG
CACACGTAAGGGCACGAGACTCCTCCGATGTAAGTCTGCATATATGCGGCGTTGATGGCTACCGCGAGAGGTCCGTTCTTGACAAG
ATTCGCAGCGATCTGGTCTTCGTCGATGGAAATGACGCTGAAGTTGGAGACGGACGCAACGATCTTGGACTTGTCTAGCTTACAAG
TAGGACCGTCCTTTCCGGTGTAAGGATAGTCTTCTTCTCTCATGAGCCCTCCGGTTTTGAGTGTATACTCAAAAGCGCTGTTCATG
AGGCCACCGTTGCAACCAGAGTCGCATGAACCTGCCTCTTCTGGGTCACACTCGTGATCACAGTCGACAAGCTGTTGCTCGCTAAG
GCTGACGAGCTTGCCGGTAGCGAGGAAGTTAGCACCTTCCAGAGCTCCGGTTGCACTGAAACTCCAACAAGAACCGCAAGATCCCT
GGTTTTTGACGGGGGTAACAGCGCCACGATCTCTCCAATCAAACTCCTCGGGGAGATTCTCGGTAGGGAGGATGGGAGCCTTGTTG
GCGTCCTTGGGGAGCTTAAACCCGCCTCCTTTAACACCGAGATGCTTCTCCCTGAACTCTGACTGAGTCAGATCCGAGAACTGCGT
GACGCCGTGGCGAGCGGAGGGGTCAAGCTTCTGGTGGCGCCTCGCTCGCCTGAGGTTGGCTTTGAATACGGAGAATCTGTAGTCGT
GCTCTTGGACGGACGCGTAAGCCTTGCCGAACTTTTTCTTGAAGAGAGAGAAGTGATCTTCCGAGGACAGAGCCTTGGGCTCGGCT
CCTCCTTCAACCACCTGCCTGATCACGAGATCATCGCCGTCGGAGGAAGCGGAGACGATGACGAGGAGAAAGAGAGCGAAGACGGA
GAGAGAAAGCTTGAGACGATCCATTTGGAGTTTGAGAATGAAGAAAGCAGAGAGGGCAAGGAGATTGATTAATATAGAAGAAAGAA
AGAAACTGTCTTAATACGATTAGGTTCT
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GenBank top hits (Blast detail) | Score | e value |
AAL60581 senescence-associated cysteine protease [Brassica oleracea] | 1818 | 6e-201 |
BAJ33785 unnamed protein product [Thellungiella halophila] | 1771 | 2e-195 |
XP_002868883 hypothetical protein ARALYDRAFT_490677 [Arabidopsis lyrata subsp. lyrata] | 1760 | 3e-194 |
NP_568052 cysteine proteinase RD19a [Arabidopsis thaliana] | 1730 | 1e-190 |
AAM65162 cysteine proteinase RD19A [Arabidopsis thaliana] | 1725 | 4e-190 |
Swiss-Prot top hits (Blast detail) | Score | e value |
P43296 Cysteine proteinase RD19a | 1730 | 4e-192 |
P43295 Probable cysteine proteinase A494 | 1614 | 1e-178 |
P25804 Cysteine proteinase 15A | 1349 | 6e-148 |
Q10716 Cysteine proteinase 1 | 1273 | 4e-139 |
P04988 Cysteine proteinase 1 | 700 | 1e-072 |
TrEMBL top hits (Blast detail) | Score | e value |
Q8W179 Senescence-associated cysteine protease | 1818 | 4e-201 |
Q0WWF3 Drought-inducible cysteine proteinase RD19A | 1730 | 7e-191 |
Q8LAT5 Cysteine proteinase RD19A | 1725 | 3e-190 |
Q058I7 At2g21430 | 1614 | 2e-177 |
Q680L1 Putative cysteine proteinase | 1606 | 2e-176 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT4G39090.1 RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type endopeptidase/ cysteine-type peptidase | 1731 | 3e-193 |
AT2G21430.1 cysteine proteinase A494, putative / thiol protease, putative | 1614 | 1e-179 |
AT4G16190.1 cysteine proteinase, putative | 1337 | 1e-147 |
AT3G54940.2 cysteine-type endopeptidase/ cysteine-type peptidase | 1047 | 6e-114 |
AT5G60360.1 AALP (Arabidopsis aleurain-like protease); cysteine-type peptidase | 569 | 2e-058 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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