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Information for unigene UN19818

FASTA Sequence
Unigene ID: UN19818Length: 1329  SNP
GTCCTGTTAAATAGTGGCCTTATTTGTTTTCTCATTGGTTTCAGGTTTGTCCCCAAAATAAAATAGTGGAAATATGACAAGCAGCA
CAAAATAAACATACAAAACAACAAATGAATACAGAAACAAAATAGAATTACAACGTATCCTTACAGAAAGAACCTCATAAATTATA
CTTATTTTCATTTTTACCCCATTAATATTTTTTGGTTCATGGCCTAGATACAAGAGAGAAAAGTAGTAGTGATTAATATGGTTTAG
CATGGTTTTCCGACCCGGCAATCCAATGCTCCGGCGTATTTGGTAAGCTTTGAAACGGCCGAACCGTGTTTGGGCTTTATCATCTG
TTGTCTAGAGTGTGAACTCATGAACCTTGGATTTCCAGATTGTCTGAAATATGCATTGTTCATGAAAATGTCTTTGTCGGATCTCC
AATTCCAATTTTTCCACTCCGATTCTGGAGCATAATCCCTCTTTGTCACCTCTCTGTAATGTTGTATGTGAGGAGGAGCGATGAAA
CGGTTTCCGTGGCTGAGAATGGTAGGACTTTGGCTACCGCCGATAGCGTAAAGCTCCCAGTGAGTGTAGTCATTGTTGACAACATG
GACGAAACCCCACCGAATCCTCGGCATCCTCTGCACAAGTCCTTTACCAAAGTGGTTGAAAGCCACAGTGACTTGCATCTTCTTGT
CCGCTTGGTTGTCATTTTGTGCACCAAGCAACATCACATCGTTGTGGTGGGTGAAATGAGAGTTAGAGATAGTGATCCCGGTGGAG
CCCATTATAGCGTCGATGAGACCATCTTGGCATTTAGACATAGAAATGTGGTCAAGCCAAATGTTTGTTGCTCCAAAGATAGAGAT
ACCATCTCCATCGGCCTGTCCTCTAAACCCAAAGTGGTCATTAGAGTTTCTTATCATGCCACCACTGCCGGGGACGATGTGATGCA
CGTGAAGCCCATGGATGATGATATTTTGCACGTACTGCATCGTGATCCCAGCACCATATGCGATGTGCACGTTAGTGCCACGAGCA
TCAATCGTCTTGTGACTATTAATCATTAGCTCTTGGCTCAACCTAATGCTCATATCGTGCTTGAAAATGATCCATAGCGGTTCGTT
CTGAATCACGGCATGACGCAGTGTTCCAGGTCTAGGGTTCACCGTATCATCGTCTCTGTTGCTAGTGACCACGTAGATTCGACCGC
GTATGCCTCCCGTGGTCCTGTAACCGAATCCACGAACACATTTGGCGAGGTTCTTGCGGCGGCTGGCCCAATTGGGCTGGCAACGC
CAACATTTATCGATAGGGTTACTTGCAGTGCAAGGTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002882189 pectate lyase family protein [Arabidopsis lyrata subsp. lyrata]17612e-194
NP_186776 putative pectate lyase 7 [Arabidopsis thaliana]17504e-193
AAM60924 putative pectate lyase [Arabidopsis thaliana]17504e-193
BAH20311 AT3G01270 [Arabidopsis thaliana]17504e-193
XP_002871648 pectate lyase family protein [Arabidopsis lyrata subsp. lyrata]16887e-186

Swiss-Prot top hits (Blast detail)Scoree value
Q9SRH4 Probable pectate lyase 717502e-194
Q9LFP5 Putative pectate lyase 1916784e-186
P15722 Probable pectate lyase P5912492e-136
Q9M9S2 Probable pectate lyase 312214e-133
P40973 Pectate lyase12027e-131

TrEMBL top hits (Blast detail)Scoree value
B9DHU4 AT3G01270 protein (Fragment)17503e-193
Q08A70 At3g0127017503e-193
A0MFG0 Putative uncharacterized protein (Fragment)16779e-185
B9IJT5 Predicted protein13533e-147
B9S2B4 Pectate lyase, putative13516e-147

Arabidopsis top hits (Blast detail)Scoree value
AT3G01270.1 pectate lyase family protein17511e-195
AT5G15110.1 lyase/ pectate lyase16784e-187
AT1G14420.1 AT59; lyase/ pectate lyase12223e-134
AT2G02720.1 pectate lyase family protein11685e-128
AT3G07010.1 pectate lyase family protein11623e-127

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
98  35%
 
85  22%
 
105  22%
 
121  4%
 
72  9%
 
112  9%

Unigene MembersMember information