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Information for unigene UN19847
| FASTA Sequence |
| Unigene ID: UN19847 | Length: 1495 |
| SNP | TTTCCCTCGTCTTTCTTTCCATCTCCTTAATAATTTTTATTAATTAAAATGTTAAATGGCCTTTAGGCCTATCGGATTCACAATCT
CCTCTCTTCGCAACAACGCTTCCGCCGCCGCCAACGACCTCCGCTTCTCCTTCCTCTCCATCTCTCCCTCCCCCTCGAACCTCCTC
TCCTCTCTCCGTCGATTCGCATCCAGCGCCTCTCTGTACCGCCAGCAACAACAACAATCCCGCGTGAATAAATCGGAAACGCTGGC
GCAGAAGATCGGAAAATCAATCCGGCGTGCCGGTGCGCCGTCTAAGGCTAGGGTTTACGCCGATGTCAACGTCATAAAACCCAAGG
ATTATTGGGACTACGAGTCCCTCGCTGTTCAATGGGGGGCACAGGATGATTATGAGGTGGTGAGGAAGGTGGGAAGGGGAAAATAC
AGTGAGGTCTTTGAAGGCATCCACGCCACTGATGACGAGAAATGCGTTATCAAGATCTTGAAGCCTGTCAAGAAGAAGAAGATTAA
GAGAGAGATTAAGATTCTGCAGAACCTCTGCGGCGGGCCGAATATTGTCAAGTTGCTCGACATTGTTAGAGATCAGCAGTCCAAGA
CGCCCAGCTTGATATTCGAGCATGTCAACAATAAGGATTTTAAAGTCCTCTATCCGACTCTCTCTGACTATGATGTTAGATACTAT
ATCTTTGAACTTCTGAAGGCGTTGGATTTCTGCCATTCCCGTGGAATCATGCACAGAGATGTGAAACCGCATAATGTTATGATTGA
TCACGAGCAACGGAAGCTACGCTTAATCGACTGGGGTTTGGCAGAGTTCTACCATCCTGGGAAAGAATACAATGTTCGTGTTGCTT
CAAGATACTTTAAAGGACCAGAGCTGCTGGTGGATTTAATGGATTATGACTATTCATTAGACCTGTGGAGTCTTGGCTGTATGTTC
GCTGGAATGATATTCCGCAAGGAACCCTTCTTTTATGGTCATGACAACTATGATCAATTGGTCAAAATCGCTAAGGTACTCGGTAC
AGACGAACTCAACACCTACCTAAACAGATACCGCATTGAGTTGGACCCTAATCTTGCATCCCTCGTTGGGAGACATAGCCGTAAGC
CATGGTCAAAGTTCATCAATTCCGAAAACCAGCACTTGGCAGTTCCTGAGGCTGTTGATTTTGTGGACAAGTTACTGAAATATGAT
CACCAAGAAAGGCCAACTGCTAAAGAAGCAATGGCACATCCGTATTTCAACCCGATTAGAAATGCAGAAAGCAGTCGCACCACCCC
GCGTGGCCAATGATCCTGTAACATTTGCTTGTTCAGTTTTGTTTTGTTTTTTTTTCATTTTTATTTCCTCACAGGAATTCTATTTG
TTTTAAAAGTCGGTTTGCCATGTTTCTTTTTTTTAATTGTGCGTGTTGCTGTTTTGACCTTTCTCAGTGTTTCCTTTGAATCTTGC
ATGATTTAAAACCCCCCAACATTATTCTTTTGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAD12663 casein kinase II alpha subunit [Sinapis alba] | 2018 | 4e-224 |
| XP_002880479 hypothetical protein ARALYDRAFT_481178 [Arabidopsis lyrata subsp. lyrata] | 1847 | 3e-204 |
| NP_179889 casein kinase 2, alpha polypeptide [Arabidopsis thaliana] | 1838 | 3e-203 |
| XP_002525258 casein kinase II, alpha chain, putative [Ricinus communis] | 1737 | 2e-191 |
| XP_002303393 predicted protein [Populus trichocarpa] | 1731 | 8e-191 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P28523 Casein kinase II subunit alpha | 1553 | 2e-171 |
| Q08466 Casein kinase II subunit alpha-2 | 1545 | 1e-170 |
| Q08467 Casein kinase II subunit alpha-1 | 1544 | 2e-170 |
| O64817 Probable casein kinase II subunit alpha | 1496 | 6e-165 |
| P28020 Casein kinase II subunit alpha | 1357 | 8e-149 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8VX01 Casein kinase II alpha subunit | 2018 | 3e-224 |
| O64816 Putative casein kinase II catalytic (Alpha) subunit | 1838 | 2e-203 |
| B9SGY9 Casein kinase II, alpha chain, putative | 1737 | 1e-191 |
| B9GYX9 Predicted protein | 1731 | 6e-191 |
| A5AYZ7 Putative uncharacterized protein | 1726 | 2e-190 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G23070.1 casein kinase II alpha chain, putative | 1843 | 3e-206 |
| AT5G67380.1 CKA1 (CASEIN KINASE ALPHA 1); kinase | 1546 | 9e-172 |
| AT3G50000.1 CKA2 (CASEIN KINASE II, ALPHA CHAIN 2); kinase | 1545 | 1e-171 |
| AT2G23080.1 casein kinase II alpha chain, putative | 1496 | 5e-166 |
| AT2G23080.2 casein kinase II alpha chain, putative | 1362 | 2e-150 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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