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Information for unigene UN19884
| FASTA Sequence |
| Unigene ID: UN19884 | Length: 780 |
| SNP | GGAGACAGCTTCATAATGCTCAGCCATCTCCTCAATCGCTCTCCCAATCCATCTCTTGTCTTCTCCAGAACCTTCTCCTCTACTAC
ACTTTTCGTCAAAGGCATCTCTTTCTCAAGCACAGAAGAAACATTAACACAAGCTTTTTCTCAATATGGTCGTGTTCTTGGTGTGA
ATGTTGTGATGGACAAAGTCAGATGCAGACCAAAAGGGTTTGCTTATGTCAAATTCTCTTCCAAAGAAGAAGCCGACGAAGCTTTA
TTACAACTTAACGGACAGTTGGTAGACGGGCGGGTCGTGGTCCTCGACACAACAAAAACCGTAAAACAGAAAGACCAACCAGACTG
CAAGCCTAAGCATGCAGTGGAAGGAGTTCCCAGCTGCCAGAACAAGGTTATTCCAGAAAATTAGGCAAGAAGGTTTGATGTGGAGT
TTGCTAGATCTACCGGTTCTTTCTACTAAAAAGATCTCATTTCTGGAAGACCGCATGGGTATTTGAACAGAGTTGGCTGGTGATGG
TTGCTGTATGCAAAAAGGTCTTACAATTTTCTACTCTCTCTATCTCCAACTCTTGTCTCTTTGTCCTCCTTTAGATTTGTACCCCC
CCTCGTAGTACCTGTGATTCTCTTTACTTTCTTTTTGGCTGTTTTCTCTTTCGCCTTCCAGCGACGCCATGGTTTGGATTACTTTG
TCTTGTAGGCAATTCTTTTGTGTTTTTGTCCTTTTCCCTCGGAAACAAAGCTCTTTCTCAAGTTAATTGGCAGTGCAGGTCAATAA
CATTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565646 RNA recognition motif-containing protein [Arabidopsis thaliana] | 394 | 3e-036 |
| XP_002880907 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | 392 | 6e-036 |
| CBI28286 unnamed protein product [Vitis vinifera] | 261 | 9e-021 |
| XP_002523844 Cold-inducible RNA-binding protein, putative [Ricinus communis] | 249 | 2e-019 |
| ACU16101 unknown [Glycine max] | 235 | 9e-018 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q28IQ9 Cold-inducible RNA-binding protein | 176 | 3e-012 |
| Q9DED4 Cold-inducible RNA-binding protein B | 166 | 4e-011 |
| O93235 Cold-inducible RNA-binding protein A | 164 | 7e-011 |
| Q14011 Cold-inducible RNA-binding protein | 164 | 7e-011 |
| Q5RF83 Cold-inducible RNA-binding protein | 164 | 7e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q1ECN0 At2g27330 | 394 | 2e-036 |
| B9SCX5 Cold-inducible RNA-binding protein, putative | 249 | 1e-019 |
| C6T363 Putative uncharacterized protein | 235 | 6e-018 |
| Q9XIP0 Putative RNA-binding glycine rich protein (RGP-2) | 231 | 2e-017 |
| B9HQ39 Predicted protein | 223 | 2e-016 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G27330.1 RNA recognition motif (RRM)-containing protein | 394 | 1e-038 |
| AT1G73530.1 RNA recognition motif (RRM)-containing protein | 220 | 2e-018 |
| AT3G46020.1 RNA-binding protein, putative | 163 | 9e-012 |
| AT5G61030.1 GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding | 163 | 9e-012 |
| AT3G47120.1 RNA recognition motif (RRM)-containing protein | 149 | 4e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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