Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN19904

FASTA Sequence
Unigene ID: UN19904Length: 1520  SNP
AGAATAAAAAATAAAAATGTGAGAGATTGGATTAACAAACGAAGCAGTATGAGTTTCAAAACCATATTCCAAAACACAAGAAAAGA
GACAACAAAACGTTAAGAAAAACAAACAGACAAGTTCTTGCGAACTAAGCTAAAGAGAAAGTAAATGGAGAGGTAAATGGTAAACA
ATGGCTCACCGGATAAAATAACGATTTTCACTGGCAAAGCTGCTCAACGGCAGTCACGATCTGAGCCGGTTGAACAACGGTCCACT
CCTCCAGCGTACCAGCGTACGGTGTAGGAACGTCCTGAGAAGACAAACACATCACCGGAGCATCTAAATAGTCATGAAAGTTCTCA
TTAATTGCAGCAGTAAGACTAGCTCCAATCCCACCGGTTCTCATACACTCCTCCACGATCAAAACCCGGTGCGTTTTCTTAACCGA
GTTCCCGATCGTGTGAAGATCAAACGGTTTCAGCGACCTGATGTCGATGACCTCAGGGTCATACCCTTTGTTCACCAGGGTTTTAG
CTGCCTGCATCACATGGTACCTCATCCGCGAGTAAGTGAGGATGGTGATGTGCTCTCCAGGTCTGACCATCTCAGCTTCTTCAAGA
TTACAGATGTACTCTTCGTCCGGGATTTTCTCCTTGAGGTTGTAAAGCAGAACGTGCTCAAACAGAATCACAGGGTTCTCGCTCCT
GATCGCAGCTTTCATCAAGCCTTTGGCGTTGTAAGGAGTCGAGCAAGCAACCATCTGGATCCCAGGAATGGACTGGAAGTAAGATT
CTAGCCGCTGCGAATGCTCAGCGCCAAGCTGGCGTCCCACTCCACCGGGACCACGGATGACAACCGGGATAGTGAACTGGCCACCA
GATGTGTAGTGAAGCATTCCACAGTTGTTGGAGATTTGGTTGAAGGCCAGGAGGAGGAAACCCATGTTCATACCTTCGATGACGGG
TCTTAGACCAGTCATGGCGGCTCCAATGCCCATACCAGTGAATGCGTTTTCACAAATAGGAGTGTCGAGAACCCTGAGGTCGCCGA
ATTTATCAGCAAGGCCTTTGGTAACTTTGTAGGAGCCACCGTAGTGGCCCACGTCTTCACCCATAACACATACATGTGGATCTCTG
TCCATCTCTTCTTCCAGACCTTCCTGAAGAGCCTCGAAAAGCAGTAGTTCATGTCCAGTGCCAGTGGTGGCAGATGACTCCTCCGC
CTTGGTGGCAACAGCAGCATTGGCAATCAGTTTCTGAGAGTGACGAACTCTGAGGAGGCTCTTCTTACTCCCATCAGATCCAGCAG
CAGCAGACACAATGTATCTCTTGCTGTTCCTCGCTGGGAGATTGGTGCGAGAAGGAGGAGCAACGAGTTTCTTCGGGTTAAAGGTC
GACAAGGCCGTAGCAGCTCCAGCTCCAGCTCCTCCATGGATTCTCGCTGCCATTTCTTCTTCTTTTTTCCAGGGACGGAGAGAGTG
ATGAAGGCGGAGAAATCGAAGGGAGACTGTGAAATCGATTCTTCTGTTAGAAACTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAB86804 pyruvate dehydrogenase E1 beta subunit [Arabidopsis thaliana]18617e-206
NP_174304 pyruvate dehydrogenase E1 beta [Arabidopsis thaliana]18609e-206
XP_002893601 pyruvate dehydrogenase E1 beta subunit [Arabidopsis lyrata subsp. lyrata]18492e-204
XP_002881346 transketolase family protein [Arabidopsis lyrata subsp. lyrata]18195e-201
NP_181006 pyruvate dehydrogenase E1 component subunit beta [Arabidopsis thaliana]18034e-199

Swiss-Prot top hits (Blast detail)Scoree value
Q32RS0 Pyruvate dehydrogenase E1 component subunit beta13811e-151
Q32RM2 Pyruvate dehydrogenase E1 component subunit beta13731e-150
Q8MA03 Pyruvate dehydrogenase E1 component subunit beta13391e-146
Q1ACL0 Pyruvate dehydrogenase E1 component subunit beta12951e-141
P51266 Pyruvate dehydrogenase E1 component subunit beta12117e-132

TrEMBL top hits (Blast detail)Scoree value
O24458 Pyruvate dehydrogenase E1 beta subunit18615e-206
Q9C6Z3 At1g30120/T2H7_818606e-206
O64688 At2g3459018033e-199
Q8LAI3 Putative pyruvate dehydrogenase E1 beta subunit17998e-199
B9IJS2 Predicted protein17593e-194

Arabidopsis top hits (Blast detail)Scoree value
AT1G30120.1 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring)18659e-209
AT2G34590.1 transketolase family protein18041e-201
AT5G50850.1 MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring)6793e-071
AT1G55510.1 BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)/ catalytic5314e-054
AT3G13450.1 DIN4 (DARK INDUCIBLE 4); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)/ catalytic5119e-052

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
65  16%
 
96  19%
 
73  9%
 
219  28%
 
122  6%
 
193  9%
 
181  3%
 
201  3%
 
101  3%
 
111  3%

Unigene MembersMember information