RadishBase

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Information for unigene UN19907

FASTA Sequence

Unigene ID: UN19907	Length: 937		SNP
GGACTTTCTTCTTTGTCTGGAACCATCACACGAAGAACAGAGACGACACTTTCTTCTCCCGGAAATATCTCATCTCAAAAAAAAAA AAATCTTTCCGACAATGTCTTCTCGCCGGAGAGTTCTTCTGAAGGTTATCATCCTCGGTGATAGCGGGGTTGGCAAGACATCGTTG ATGAATCAGTTTGTGAATCGCAAGTTTAGCAATCAGTATAAAGCTACGATTGGAGCTGATTTCTTGACCAAAGAGGTTCAAATCGA TGACAGGATCTTCACTTTACAGATTTGGGATACTGCTGGGCAAGAAAGGTTCCAAAGTCTGGGAGTTGCTTTCTACAGAGGAGCTG ATTGTTGTGTTCTTGTTAACGATGTCAATGTTATGAAGTCTTTCGAGAATCTTAATAACTGGAGAGAAGAGTTCTTGATTCAGGCT AGTCCATCAGATCCTGAGAACTTCCCCTTTGTCGTGTTGGGGAATAAGACCGATATTGACGGTGGCAAGAGCCGAGTGGTTTCTGA GAAGAAAGCAAAGGCATGGTGTGCATCTAAAGGTAACATTCCTTACTTTGAGACATCTGCTAAAGAAGGATTCAATGTCGACGCGG CTTTCGAATGCATCACCAAGAATGCCTTCAAGAATGAACCTGAAGAAGAACCGTACATGCCTGACACTATTGATGTTGCTAGAGGT CAGCAACAAAGATCAACAGGGTGTGAATGCTAAATCAAAGTTTGTTGCAGAGGGTTACCATACAACTATAAAGTTAATTTCAGTTC ATTGATTCACAGATTCTAAAGGATTGAGTTCCTTTCTTTTACAATTCAGACACAATATAATGTCACAAAACTCTCATCTATGATCT TTCTCTGTCTCTTCTTGTGTATACATTGCCTTGAACTTGATTACAATTCATCTTTAGCAGAACCATCCTTTGGTTTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_175638 RAB GTPase homolog G3D [Arabidopsis thaliana]	1061	2e-113
XP_002882978 hypothetical protein ARALYDRAFT_479064 [Arabidopsis lyrata subsp. lyrata]	1032	5e-110
NP_188231 RAB GTPase-like protein G3C [Arabidopsis thaliana]	1023	5e-109
Q9XER8 RecName: Full=Ras-related protein Rab7	990	4e-105
XP_002284408 PREDICTED: hypothetical protein [Vitis vinifera]	984	2e-104

Swiss-Prot top hits (Blast detail)	Score	e value
Q9XER8 Ras-related protein Rab7	990	2e-106
O24461 Ras-related protein Rab7	976	7e-105
Q40787 Ras-related protein Rab7	929	2e-099
P31022 Ras-related protein Rab7	912	2e-097
P93267 Ras-related protein Rab7A	901	3e-096

TrEMBL top hits (Blast detail)	Score	e value
Q9C820 AtRab72	1061	1e-113
Q9LW76 At3g16100	1023	4e-109
B7FN46 Putative uncharacterized protein	984	1e-104
B9RQM0 Putative uncharacterized protein	984	1e-104
B9GG27 Predicted protein	980	4e-104

Arabidopsis top hits (Blast detail)	Score	e value
AT1G52280.1 AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding	1062	6e-116
AT3G16100.1 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C); GTP binding	1024	2e-111
AT3G18820.1 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding	925	5e-100
AT1G49300.1 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding	910	3e-098
AT1G49300.2 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding	910	3e-098

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	8			32%


10	3			12%


7	6			24%


8	2			8%


12	1			4%


6	4			16%


11	1			4%

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