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Information for unigene UN19945
| FASTA Sequence |
| Unigene ID: UN19945 | Length: 2132 |
| SNP | GGGCCCAAGTCAATAAACAACTTGGCTTTTCTCTAATAAAGCCCCTCCCTCTCCGATTAACCTCTAAACAAAACCGGAGGGAGCAA
AAAAATTCAAAAAATCAGAAATACACAAAAATAAAAATTAGAAAATGATTGGAAAAGTTGTGGTCTCCGTGGCCTCCGTCCTTCTA
TTGGTCGGAGTAGCCATTGGAGTCGTTGCCATCGTTAATAAAAGCGGCAACACTAATTTGTCTCCACAGATGAAAGCTGTTCAAGG
TATTTGTCAAACCACTGCTGACAAAGCCTCATGTGTCAAGACTCTCGAGCCTGTCAAGAGTGATGACCCAAACAAACTGATCAAGG
CCTTCATGCTCGCTACACAAGATGCAATAACCAAATCATCAAACTTCACAGACAAAACCGAAGGCAACATGGGTTCGAGCATCTCC
CCAAACAACAAAGCCGTTCTTGATTACTGCAGGAAAGTTTTCATGTACTCGCTTGAGGATCTCGGTACCATTCTTGAGGAAATGGG
TGAAGATCTTAACACGATCGGTAACAAATTCGACCAGATTAAACAATGGTTAACCGGTGTTTACAATTACCAAACCGATTGTCTTG
ACGATATTCAAGAAGATGATTTGAGAAAGACTATTGCTGAAGGCATTGCAAGCTCCAAGATTCTTACTGGTAATGCTATCGACATC
TTCCACACAGTTGTTAGCGCAATGGCCAAGATCGACGCTAAAGTCGACGATTTCAAGAACATGACAAGTGGAATCTTCACTCCTTC
CGACAAAGGATCAGCTCCGGCCGGCAAAGAAGCCACTCCTGTCGACACTCCCGTGGCTGACCCAGACGGTCCTTCCCGTCGCCTTC
TTGAAGACCTTGACGATCTCGGAGTCCCAACATGGGTTTCAGGTGCAGACAGGAAGCTTATGGCTAACGCTGGACGTGGCCGAAGA
GGAGGTGGTGGAGCTCCTAGAATCAGGGCAACCTATGTGGTCGCTAAGGATGGAAGCGGACAGTTCAAGTCAATTCAACAAGCTGT
TAACGCTTGTCCCGACAAAAACGCTGGAAGATGCATCATCCACATCAAGGCTGGTATCTACAGAGAGCAAGTCATCATCCCTAAGA
AGAAGAACAACATCTTCATGTTCGGAGATGGTGCAAGAAAGACCGTTATTACTTACAACAGAAGTGTTGGTCTCAGTTCTGGAACC
ACCACTTCTACTAGTGGCACAGTCCAGGTTGAATCTGAAGGATTCATGGCTAAATGGATCGGATTCAAGAACACAGCCGGTCCAAA
TGGGCACCAAGCCGTTGCTATCAGAGTCAACGGAGACCGTGCCGTGATCTTCAACTGCAGATTCGACGGTTACCAAGACACACTAT
ACGTCAACAACGGCCGTCAGTTCTACAGAAACTGCGTCGTCTCAGGAACAGTCGACTTCATCTTCGGCAAATCCGCGACCGTTATC
CAAAACTCACTCATCGTCATCCGCAAAGGAAACAAGGGACAATACAACACGGTCACAGCCGACGGAAACGAAAAGGGTCTATCCAT
GAAAATCGGTATCGTCATCCAGAACTGCCGCATCGTTCCCGACAAGAAGCTAGCGGCGGAGAGGCTGACCGTTGAGTCGTACTTGG
GAAGGCCATGGAAGCAGTTCTCGACCACCGTGGTGATCAACACGGAGATCGGAGATGTGATTAGACCAGAAGGGTGGAGAATGTGG
GACGGAGAGAACTTCCACAAGTCATGTAGGTACGTTGAGTACAACAACCGTGGACCGGGAGCTATCACCAATAGGAGAGTTAGCTG
GGCTAAGGTCGCTAGGTCTGCTGGTGAGATTAATCAGTACACTGTGGCTAACTGGTTGGCTCCGGTTAACTGGATCCAAGAAGCTA
ACGTACCTGTCACGCTTGGATTATAAAGCGTATAAAAATCATTTGAATAAAAGAAAAAAAAAGACTAGTACGTGTACGTGTGTCGT
CCATGTAAAAAGTGAAAATTACATTTTCGATAGAAAGTTGTAAGATTTGCTTTTTGTTTGTCTCACGAACTAACAAAAAATTGAAG
ATTTATGTTTGTTTATTTTTTTATTTGTATATTTTCAAAATATGAAATTTTATCTACTGTGTTGTTAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_182227 pectinesterase 5 [Arabidopsis thaliana] | 2716 | 8e-305 |
| CAB58974 pectin methylesterase [Arabidopsis thaliana] | 2712 | 2e-304 |
| AAV91508 VANGUARD 1 [Arabidopsis thaliana] | 2698 | 1e-302 |
| NP_182226 pectinesterase 4 [Arabidopsis thaliana] | 2578 | 8e-289 |
| AAV91509 VGD1-like protein 1 [Arabidopsis thaliana] | 2564 | 3e-287 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5MFV8 Pectinesterase 5 | 2716 | 3e-306 |
| O80722 Pectinesterase 4 | 2578 | 3e-290 |
| Q5MFV6 Probable pectinesterase/pectinesterase inhibitor VGDH2 | 1377 | 6e-151 |
| P41510 Probable pectinesterase/pectinesterase inhibitor | 1338 | 2e-146 |
| Q42608 Pectinesterase/pectinesterase inhibitor (Fragment) | 1299 | 7e-142 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2PYP0 Pectinesterase | 1518 | 4e-166 |
| B9SRK1 Pectinesterase-4, putative | 875 | 2e-091 |
| B9GZH6 Predicted protein | 873 | 3e-091 |
| A4PU28 Pectinesterase; Pectinesterase inhibitor | 870 | 6e-091 |
| B9GEY3 Predicted protein | 858 | 2e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G47040.1 VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase | 2717 | 2e-307 |
| AT2G47030.1 VGDH1; enzyme inhibitor/ pectinesterase | 2579 | 2e-291 |
| AT3G62170.1 VGDH2 (Vanguard 1 homolog 2); enzyme inhibitor/ pectinesterase | 1378 | 4e-152 |
| AT3G14310.1 ATPME3; pectinesterase | 842 | 6e-090 |
| AT3G06830.1 pectinesterase family protein | 733 | 2e-077 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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