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Information for unigene UN20035

FASTA Sequence
Unigene ID: UN20035Length: 940  SNP
CCAACTTAAAATAAAATTTAGGATTCAATTATTTAAAAAGTATTCGTATTTAAATTCTTACAACTCATCACAACATCGGGGATCTG
TAATATTTGCCATCGTATAAGCAAAATGTACAATTCACATCACTTATGATAATTAAGAAGACTATAATATATAATGGAGTCGTTAA
TTAGCTCACCTAATTTCGCTCCGTCGCCGTTTTAGACACTAACACTACAGCTACTCGTAAGCGTATACTTAACGGCGTTATCTCCG
ACAATAACTCCGGCAGCTTTATTACCGAAGTTAATATACGCAAGACACCTCACGTAAAGATGATACTTCCCTGTAATAAACGCCCC
AACTTTCCACCTCACTTTACCGTCACCACGGATGATCAGCGTAACAGCGCCGTTATCTTGATCGCCGCCAAGACTGACGGCGTTGA
ACGGAGCGACGGGAACAGAGGTGCCGTAGACAAACGGCGACCATATGTTGACTTCTTTGTGTCCCTGATACGTAGGAGGGATCGAT
GTTCGGAAAGTGATCTGTTGGCTATGGTAAGTAGCGTAGACGTCAAGACGGTCGTAGTAGATGCCGATCTTGTCGTTAGGGTTCCG
TGAAGAGAGAGTGATTTGGAAGTTGGAGGTGAGGAGGTTCGGTGGATTGCCGGAGACGTTGAAGGCGTAGACGGTGGCGTCTTGGA
GGATGAAACGTGGCTTTGAAGGTTGGAGGATTGCCCAAACGAGGAGGATTGTGAGTAAGATGATGAAGAGGACGAAGATTACTGAC
CATATTATTCGCCGGATTAGTTTCCGGCGAGAGTGAGTGTGGGAGCCACAGTCTTTGGAGGTCATGGTGGTGGTGGTTTTTGTTTC
TCCGGGGGCGGTGGGGAGAACGTGGAGAAGTTGTTAAGAGATTTCTTTGTTTATTGTTTATTTGATGTGTTGTAAATCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_566396 NDR1/HIN1-Like protein 1 [Arabidopsis thaliana]9626e-102
AAO41900 putative VAMP protein SEC22 [Arabidopsis thaliana]9601e-101
XP_002884856 predicted protein [Arabidopsis lyrata subsp. lyrata]8936e-094
XP_002873250 hypothetical protein ARALYDRAFT_908558 [Arabidopsis lyrata subsp. lyrata]8758e-092
ABY88488 NHL1 [Arabidopsis thaliana]8434e-088

Swiss-Prot top hits (Blast detail)Scoree value
O94317 Uncharacterized serine-rich protein C215.131219e-006

TrEMBL top hits (Blast detail)Scoree value
Q9SRN0 At3g116609624e-102
Q84WG2 Putative VAMP protein SEC229607e-102
B0LZH0 NHL1 (Fragment)8433e-088
B0LZI6 NHL1 (Fragment)8424e-088
B0LZH6 NHL1 (Fragment)8415e-088

Arabidopsis top hits (Blast detail)Scoree value
AT3G11660.1 NHL19632e-104
AT3G52470.1 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein7875e-084
AT2G35960.1 NHL127552e-080
AT5G06330.1 hairpin-responsive protein, putative (HIN1)7534e-080
AT4G09590.1 NHL226352e-066

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
125  24%
 
84  19%
 
106  29%
 
94  19%
 
62  10%

Unigene MembersMember information