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Information for unigene UN20073

FASTA Sequence
Unigene ID: UN20073Length: 1878 SSRSNP
AACATTAAGAAAATATAAGAAATTGCAAATAGAAATTTGTCTGGTGAAAAGACAAAGAAAACAAAAAACAACAGAACAACTATGAT
GAGTTCCATGAGTAAGAAAGGAAAAAAAAAAGACCTAAACAAGTAAAAGAGATGTAAATCTGTAATGTCTGAAAAATTTATCTCAA
GTTGCAAATCTCTTCCCTTATCTCTCTTTAAACCAATTTAATTATCTATCAAAAGGCTTTGAAAACTCTAACACTCTTTCTTGTAC
TTGTTGGTGTTTTGCAGCAGAGGAGGTGAGGGAGATTATATCAAGCTTTGACCTTAGGAGCTACTTCACTGTTTTTCTTGTTTCTG
TTCTTACGGTTTCTGATAGTCTTGAAGCCATCATCATCTTCCCCACCACCAGCAGAAGAGCCATTCTCAGACTTGCTTCCATCTGC
AGAACCAGTCGGTGTCTTGCTCTCATCTACAACAGAACCAGTCGGAGTCTTGCTCTCCTCTACAGAGCCATTCTGTGCCTTGCTTC
CTCCACCTCCACTTCTCCCACCAGACTGTTTGCTTCCATCATACTCAACTTGCTTTTCTTTTACACGAAGCTTATGATCCCCAAGC
TTGAAGGGATTGCTCTTGGCAGCCTTAAGCATGCTCTGGACAGATGCAACAGATTCAAAGGAAACAAAACCAAAGCATCTTCCACT
AGCCCTGGAGCTTCTGATTTGAACTCCACCTTCTTTGATAGGGCCAAAAGCCTTGAACAGTTCATAGAGCTGAGGTGCCTTTGCAT
CCATTGGCAGATTTGACACAAATACCGAAGTTCCTGGTTCGTCGACGATCCTCTGGTCACTTTTCTTTTCAGGTTTACCAACAGCA
GAAGCAGCAGGTGCTGGAGCTGCACGCCCTTTGGATGGTGCCATGGTTTTAGGTTTCTGAACGGCGGGGGCTGCTTTAACTTGGAA
GGGAGCAGCGTTCCTCAACATTGATTGAACCATCGCAGCATACGATTTCTTGGCTCCATCAGCAGCAGCAGCAGCAGCAGTTTCAG
CAATTGGCTCTTTAGGTTTTTGAGCAGTAACCGGAGGAGGAGGAGTAGCTTCAGCAGCAACAACCTTCTTGACCTCAGCAGTATTA
ACAGACTTCTTGGCAGGAGCATCGACCATGTGGACCAGCTCGGTCTTGCTTATCACATCAACTGGCTTCGCCACTTCAGATTCAAC
AAGAGTTGGAGGGGAAGACTCTTCCTCATCAACAAAACGATACATGTCATTGACGACAACATGGGCCTTGTCCTGAGGCGCCAGAT
AGAACGTCTGTGAAAACTTCCTCTTGAGCTTGTCTTCGCCAGTCAAGAAACCAACAACCATGATTATTATCCCATCTTGCAACGAC
CTCTGAGAGTCCACACTAAGTACATCGTATGTATTTCCCTTGTATTCATAGGTAAGGTAGTGCTCCTTGATAGCCTCGAGGGAAGT
AAAAGAGAGCATGGAACCATCAGGACCTCCTGGTCTGGTGACAACGCTACCATCAACATAAAGCCTATGAGCTTCATGAGTGGCGC
TTCCCATTATGTAATAGTACTGTTCAACAAAAGCCTCAGAGAGTACTTCGTGAGGAGCACTGTGAACAACAGCACCTCCTTCCTCC
GCAGCAGCCATTATCTAATCCCCTTTTCGATCAGATTGAAAATCTGAATTCGGATTTAGAGAACGATGGAACCGAGGAGAGTAAAA
AGGAGGAAGCTTTTTGTTTTGGTGATTAGGTTTTAAAGAGAGTCGAGAGAGAGATTTGTGAATGAGGAAGGAGGAGGCAAGAGAGG
AGCTCTTTAAATAGGGTTTTAGAGAGGGCTCTCTCTCTCTCCCACTCGCAGACAGATTCCTGCTTTGGTTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002887226 hypothetical protein ARALYDRAFT_894705 [Arabidopsis lyrata subsp. lyrata]10535e-112
NP_177085 nuclear transport factor 2 and RNA recognition motif-containing protein [Arabidopsis thaliana]9398e-099
NP_974111 nuclear transport factor 2 and RNA recognition motif-containing protein [Arabidopsis thaliana]6791e-068
XP_002890018 nuclear transport factor 2 family protein [Arabidopsis lyrata subsp. lyrata]5867e-058
XP_002876890 RNA binding protein [Arabidopsis lyrata subsp. lyrata]5572e-054

Swiss-Prot top hits (Blast detail)Scoree value
Q5SZQ8 CUGBP Elav-like family member 31581e-009
Q8CIN6 CUGBP Elav-like family member 31553e-009
Q08E07 CUGBP Elav-like family member 31501e-008
Q8N6W0 CUGBP Elav-like family member 51382e-007
Q91579 CUGBP Elav-like family member 3-A1321e-006

TrEMBL top hits (Blast detail)Scoree value
Q9LDI9 At1g692509404e-099
Q3ECF5 Putative uncharacterized protein At1g69250.26806e-069
Q8GW56 At2g036405499e-054
Q9ZPR2 Putative uncharacterized protein At2g036405471e-053
Q9LMX6 At1g137305434e-053

Arabidopsis top hits (Blast detail)Scoree value
AT1G69250.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein9447e-102
AT1G69250.2 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein6803e-071
AT2G03640.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein5495e-056
AT2G03640.2 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein5478e-056
AT1G13730.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein5432e-055

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  18%
 
201  9%
 
94  36%
 
102  18%
 
181  9%
 
191  9%

Unigene MembersMember information