Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN20089

FASTA Sequence
Unigene ID: UN20089Length: 825  SNP
GGGAGTCTTAGAAAGCGCTCTTATAGTTTTCTCATCAAGCGCCTCCGTTTAGCTCTTAGCTCTTCTGTCTCCTCTTCGGCTGATCT
CTCCGTTGAAAATGGTTGCTTTCCGGTTTCACCAATACCAAGTGGTTGGGAGAGCACTTCCAACAGAGAAAGATGTGCAGCCTAAG
ATTTACAGGATGAAGCTATGGGCCACCAATGAAGTCCGCGCCAAGTCCAAGTTTTGGTACTTCTTGAGGAAGCTGAAGAAGGTTAA
GAAAAGCAACGGACAAATGCTTGCCATCAATGAGATTTTCGAGAAGAACCCCACGAAGATCAAGAACTACGGTATCTGGCTCCGTT
ACCAGAGCAGAACCGGGTACCACAACATGTACAAGGAGTTCCGTGACACCACGCTCAACGGTGCAGTGGAGCAGATGTACACCGAG
ATGGCTTCTCGCCATAGAGTGAGGTTCCCTTGCATTCAGATCATCAAGACCGCCACAGTCCCCGCAAAGCTGTGCAAGAGAGAGAG
CACCAAGCAGTTCCACAACTCCAAGATCAAGTTCCCTCTTGTTTTCAGGAAGGTCAGGCCACCGACCAGGAAGCTCAAGACTACGT
ACAAGGCCTCAAAGCCTAACCTTTTCATGTAATAAAAAATCCAAAATCTTTACATGATTCTCCTTATCCTTTTTCAACCATCAGCT
TAGGCTTCTTGTTCCTCAGTCTGATCAAAACATCTTCTCTTGGATTTTCAAATTTTTGCATCTTTTATCAACTTTGTTTTCTAGAT
ATATGATAAGATATTCAGAGGACTCGTTTAAATTTTCAAAGCTTTGCTGCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_180995 60S ribosomal protein L18a-2 [Arabidopsis thaliana]9132e-096
ABK93213 unknown [Populus trichocarpa]9052e-095
ACU14501 unknown [Glycine max]9008e-095
XP_002305712 predicted protein [Populus trichocarpa]8981e-094
XP_002317384 predicted protein [Populus trichocarpa]8962e-094

Swiss-Prot top hits (Blast detail)Scoree value
P51418 60S ribosomal protein L18a-29131e-097
Q9ATF5 60S ribosomal protein L18a8772e-093
Q9LUD4 60S ribosomal protein L18a-38735e-093
Q943F3 60S ribosomal protein L18a8531e-090
Q54MK8 60S ribosomal protein L18a4882e-048

TrEMBL top hits (Blast detail)Scoree value
A9PA10 Putative uncharacterized protein9051e-095
C6SZ28 Putative uncharacterized protein9005e-095
A9P8L2 Predicted protein8989e-095
A9PBF7 Predicted protein8962e-094
A9P8B1 Predicted protein8943e-094

Arabidopsis top hits (Blast detail)Scoree value
AT2G34480.1 60S ribosomal protein L18A (RPL18aB)9148e-099
AT3G14600.1 60S ribosomal protein L18A (RPL18aC)8743e-094
AT1G29965.1 60S ribosomal protein L18A (RPL18aA)8726e-094
AT1G29970.2 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome8645e-093

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
610  33%
 
104  13%
 
114  13%
 
123  10%
 
86  20%
 
92  7%
 
201  3%

Unigene MembersMember information