RadishBase

| | | |

Information for unigene UN20091

FASTA Sequence

Unigene ID: UN20091	Length: 1258		SNP
TTTTTTGGAAACGTACCCAAATAAAAATAAACATAGTCATACTTTATGAAAATCCACAAATGACAACAGAAACATCGCACTCAAAC ACAAAAATCACACTCAAACATAAGAAAACGTGAAACATAGTCTTTTTTTTTTTGAGAAACAACATAAAACGTATTATTATTTAAGA AAAACAAACATAAAACGTATTTAGTCCATACGGAAATCCACACAAGTATGGCTCTGATGTAACCTTATTCATAGGGAAATCAAGAA ACGGACCCAACAACGATTTCAGCTGGTGATTGGAGCGAAATAAGCTCCAAGAGAATTGAGTTGCGAGTCAGCGAGGCCATGAAAAC CAACGATCTTCTTGTCTTTCACTTCAAGTGAAATATCTGTACCTTCTTCTCCAGGAACTTTTTCAAATCCATAACATTCTGAAGTC TTTGTGTTGGTTATGAATTTAATTCCCACAATCTTGTTGGATGAATCAGACCAACCCTTCGCAGAAAGTAAATACTCGTTGGGATG ACTTATCTCAAACGTTCTAATGGAAGATCTGCCACCCTTCACACCATGGGCGGGTCCTTCCTTTGTCTGTCCGTTCTTGAGATAAT CAAACCTGATTTGCTCAATACCTCTACCAACTGCGATATGTATCTTTGTCACACCGTCGTGATCACCTCCATCATCCCATTCATTG CCTCCGTTGCCACCTTGAGCGTCAAGTTTTTGAGTACTAGATCCGCTTCCACTGTTTGAGTCATCACCTCCGGAGTTAGAGCCGAA ATAAGCTCCGATGGCATCGATAGCATTACTGCTACGTCCATGGAATCCAATAAGCTTTTCTCCATTTTCACCTTTGAACTCGAATT CGGTTCCCTTCATCTCACCGAATAAAGGAGAGGTAAATCCTTTAGAGGTTGTGAAGTACAGCGATGTGATAAGCGTTGTATCATAA GAGTAAATATGCTTGTAGGTTCCACCAACGGCAGTGATACTATCTTTCGGATAATCCACTGAAAACTCTTTTAGTTCGCCACGAGC CGCTCCATGCTCACGGATGTCGACTTTTCCGTTCTTTACGTATTCGATCTTGATATAAGTTATGTTTACATCATCGGCTCCCACAG TTATTTTCTTCACACCTTCAAAACCAACATCGTTGAATCCTTGTCCTTTGTTACCACCAAGCGGTTCCATCGTGGCCGTTCAAATC CGTCAGATATCTCCTGACTGAAAGATGATGGGGGAGAAGAGTGAATCGCAATCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CAA70587 myrosinase binding protein [Brassica napus]	1269	2e-137
CAA72270 jasmonate inducible protein [Brassica napus]	1258	5e-136
AAC08048 myrosinase-binding protein [Brassica napus]	701	2e-071
AAC08049 myrosinase-binding protein [Brassica napus]	701	2e-071
AAC08050 myrosinase-binding protein [Brassica napus]	638	4e-064

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SAV1 Myrosinase-binding protein-like At1g52030	563	8e-057
Q9SAV0 Myrosinase-binding protein-like At1g52040	499	2e-049
O80950 Myrosinase-binding protein-like At2g39310	474	2e-046
O80948 Myrosinase-binding protein-like At2g39330	465	2e-045
O04316 Nitrile-specifier protein 4	401	5e-038

TrEMBL top hits (Blast detail)	Score	e value
P93065 Myrosinase binding protein	1269	2e-137
P93659 Jasmonate inducible protein	1258	3e-136
Q96340 Myrosinase-binding protein	701	1e-071
Q96341 Myrosinase-binding protein (Fragment)	701	1e-071
Q96342 Myrosinase-binding protein (Fragment)	638	2e-064

Arabidopsis top hits (Blast detail)	Score	e value
AT1G52030.2 MBP2 (MYROSINASE-BINDING PROTEIN 2); sugar binding / thioglucosidase binding	563	7e-058
AT1G52030.1 MBP2 (MYROSINASE-BINDING PROTEIN 2); sugar binding / thioglucosidase binding	563	7e-058
AT1G52000.1 jacalin lectin family protein	532	3e-054
AT1G52040.1 MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding	499	2e-050
AT3G16450.1 jacalin lectin family protein	408	6e-040

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	5			12%


10	4			10%


8	7			17%


9	11			26%


11	6			14%


12	2			5%


7	6			14%


14	1			2%

Unigene Members	Member information