 |
Information for unigene UN20206
| FASTA Sequence |
| Unigene ID: UN20206 | Length: 1177 |
| SNP | GCGTCTGGGTATGGTGTCGCGGTGATGCCGTCTGCGAAAGGGCAGGTTCCTGAGCATCATGAGCATTTCATTGGGACGTATTGGGG
AGCTGTGAGTACTGCGTTTTGCGCTGAGATTGTTGAATCTGCTGATGCGTATCTGTTTGCGGGTCCCATCTTTAATGATTACAGCT
CCGTTGGGTACTCTCTGCTTCTCAAGAAGGAGAAGGCGATCATCGTGCAGCCGGATCGGGTTACGATCGGTAACGGACCTGCGTTT
GGGTGTGTGCTGATGAAGGATTTTCTTAGCGGTTTAGCTAAACGAATCAAGCATAACAACACTGCGTACGAGAATTACCATAGGAT
CTTTGTCCCTGAAGGGAAGCCTCTGAGGGAGAATCCCAAGGAGCCTTTGAGGGTTAATGTGCTGTTTCAACACATTCAGAATCTGC
TTTCTGCTGAGACGGCTGTGCTCGCCGAGACGGGGGATTCTTGGTTCAATTGTCAGAAGCTGAAGCTCCCTGAAGGATGTGGTTAC
GAGTTCCAGATGCAGTACGGGTCGATTGGTTGGTCTGTTGGTGCTACTCTAGGCTATGCTCAGGCCATACCGAACAAACGTGTCAT
CGCTTGTATTGGAGACGGGAGTTTCCAGGTTACCGCGCAGGATGTGTCGACGATGATACGGTGTGGGCAGAAGACCATAGTCTTTC
TCATCAACAATGGAGGGTACACGATTGAAGTGGAGATTCATGATGGTCCTTACAATGTGATAAAGAACTGGAACTACACGGCTTTT
GTTGAGGCTATTCACAATGGAGAAGGTAAATGCTGGACTGCGAAAGTGAGGTGCGAGGAGGAGCTTGTGAAGGCCATTAGCACGGC
GACGAATGAGGAAAAGGAGAGCTTTTGTTTCATTGAAGTGATTGTGCATAAAGATGACACAAGCAAGGAGCTTTTGGAGTGGGGAT
CTAGAGTCTCTGCTGCTAACAGTCGTCCTCCAAATCCTCAGTAGAGTTCGGAGATGTCCTCATCTTTTATATATTTGCAATTTGGT
AGTTCCTTTGTGTTGCTTTATGAAAAGTAGTTTGTATCCTTAGGAGAAGAGCAGTGTGAGTCTCCTTGAGGATAAAACTTTGATTG
CAAAAATAAAATTCGGTTAAACTTTGTGTGTAAATGTAAAAGTTGATCATTTCGTTTCG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866069 pyruvate decarboxylase-2 [Arabidopsis lyrata subsp. lyrata] | 1716 | 3e-189 |
| NP_200307 pyruvate decarboxylase-2 [Arabidopsis thaliana] | 1699 | 3e-187 |
| AAB16855 pyruvate decarboxylase [Arabidopsis thaliana] | 1679 | 6e-185 |
| AAO72533 pyruvate decarboxylase 1 [Lotus corniculatus] | 1597 | 2e-175 |
| AAG13131 pyruvate decarboxylase [Fragaria x ananassa] | 1581 | 1e-173 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P51851 Pyruvate decarboxylase isozyme 2 (Fragment) | 1576 | 2e-174 |
| A2XFI3 Pyruvate decarboxylase isozyme 2 | 1491 | 2e-164 |
| Q10MW3 Pyruvate decarboxylase isozyme 2 | 1473 | 2e-162 |
| A2Y5L9 Pyruvate decarboxylase isozyme 1 | 1460 | 7e-161 |
| Q0DHF6 Pyruvate decarboxylase isozyme 1 | 1456 | 2e-160 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FFT4 Pyruvate decarboxylase | 1699 | 2e-187 |
| Q96536 Pyruvate decarboxylase | 1679 | 4e-185 |
| Q84V95 Pyruvate decarboxylase 1 | 1597 | 1e-175 |
| Q9FVF0 Pyruvate decarboxylase | 1581 | 1e-173 |
| B9SWY1 Pyruvate decarboxylase, putative | 1579 | 2e-173 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G54960.1 PDC2 (pyruvate decarboxylase-2); carboxy-lyase/ catalytic/ magnesium ion binding / pyruvate decarboxylase/ thiamin pyrophosphate binding | 1700 | 9e-190 |
| AT4G33070.1 pyruvate decarboxylase, putative | 1506 | 3e-167 |
| AT5G01320.1 pyruvate decarboxylase, putative | 1492 | 1e-165 |
| AT5G01330.1 PDC3 (pyruvate decarboxylase-3); carboxy-lyase/ catalytic/ magnesium ion binding / pyruvate decarboxylase/ thiamin pyrophosphate binding / transferase | 1492 | 1e-165 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
