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Information for unigene UN20208
| FASTA Sequence |
| Unigene ID: UN20208 | Length: 1005 |
| SNP | CCAACAACACCAAAACAATAAACAAACTCGTTCGGAATTAACACGGTCGATAGAGTACATCACAGCCTCTTTAAGATAAACATACA
TTTTTAGTTTTAGATGATTGTAGAAAACATACATAGAAACACAAAGATAGAAAGGCTCATTTTAGCTGCTAAAAGTAGCGAGGAAG
CTGATGGGGCCTTTGCCAGTAAAGGCCGCCTGAAGTGAAAAGATGAGGAATGCGATCATGGCGAGACGAGAGTGCTTGATCTCAGC
CAGCTTCAAGGTATCCAACTTCGCTGGGTCAGCCGCAAGTCCCAACGGGTCAAAATACCCACCCGGGTAAATACGTTTCTCCGGAT
CCAGCTCAGCGTTACGCTGGAACTCGATGTAACCAACCACTAACACCTCGATCCATATCAACGTCGTCAAGGAGAATGGTAATGGC
TGTCCCAAATACGACGAACCTTCCACCAGTTCCACCTTCCCGGCGTCTTGCCAGGCGATCCCGGTGAGACCTTCGACGGCAAGAGC
GCCAAGAACACCAAGCATGGCCCACCTTCCATGGATAAGCTCGCATTCTCTGAAACGTTCGATCCCGAACACTTCAGTGTATGGCT
GAAACGGCGTCGGGTTGATCTCCTTCGATTCCTGCCTGACCCCAAGGATTTCACCCGCCACGTTCTTGGCGAGGTTTTGGTCAAGC
CCGTCGAAATCGTACTGAAGATACTCAGCCGGTTTACCTAAACCGAAGGGGTCGAATCCACGGTCTCCGATCATCGATCCGTCTAG
CCATTCCGGTGGGTTTGCGCCGGGGAACCAAACTAGTCGGTCTCCTTCGTTTTGGACCTGCTTGGTTTTCTTCGGCGGTGGAGCTG
CTTTCTTTTTCCCGAAGCTGAAATTGAACTTGGCTTGGACTCTACCGGCTCCGGAACTTGGATCTTGGATCCGGATTCCAAAGATA
CCAGAGGCTGCAGCTGCAGTGGTGGTAGCCATTTTGATTTGTTTCGGCTTGGCGAGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_181539 chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana] | 1339 | 1e-145 |
| XP_002879843 LHCB4.3 [Arabidopsis lyrata subsp. lyrata] | 1337 | 2e-145 |
| BAJ33709 unnamed protein product [Thellungiella halophila] | 1332 | 9e-145 |
| AAM65936 putative chlorophyll a/b binding protein [Arabidopsis thaliana] | 1325 | 6e-144 |
| XP_002526901 chlorophyll A/B binding protein, putative [Ricinus communis] | 1147 | 2e-123 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9S7W1 Chlorophyll a-b binding protein CP29.3, chloroplastic | 1339 | 6e-147 |
| Q07473 Chlorophyll a-b binding protein CP29.1, chloroplastic | 966 | 1e-103 |
| Q9XF88 Chlorophyll a-b binding protein CP29.2, chloroplastic | 952 | 4e-102 |
| Q93WD2 Chlorophyll a-b binding protein CP29 | 622 | 8e-064 |
| P12360 Chlorophyll a-b binding protein 6A, chloroplastic | 315 | 3e-028 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SLN2 Chlorophyll A/B binding protein, putative | 1147 | 2e-123 |
| B9HHN0 Light-harvesting complex II protein Lhcb8 | 1119 | 3e-120 |
| A9PK34 Putative uncharacterized protein | 1102 | 3e-118 |
| A5C288 Putative uncharacterized protein | 1019 | 1e-108 |
| B7FIZ5 Putative uncharacterized protein | 1010 | 1e-107 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G40100.1 LHCB4.3 (light harvesting complex PSII); chlorophyll binding | 1340 | 4e-148 |
| AT5G01530.1 chlorophyll A-B binding protein CP29 (LHCB4) | 966 | 9e-105 |
| AT3G08940.2 LHCB4.2 (light harvesting complex PSII); chlorophyll binding | 952 | 4e-103 |
| AT3G08940.1 LHCB4.2 (light harvesting complex PSII); chlorophyll binding | 560 | 1e-057 |
| AT3G54890.1 LHCA1; chlorophyll binding | 324 | 3e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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