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Information for unigene UN20222
| FASTA Sequence |
| Unigene ID: UN20222 | Length: 1575 |
| SNP | GTAAATGCAAATTATAACATTCTATTGATGATAGAAAAGCGAAATAAAAACCACAAGAAATGTAATACAAGGGCACTAATATATCA
GCCAAATATAATAGTACTGAAAGGTCCAAAATCCAAGCTTCCACATAGTCTTCATCATCACCATCATTATCATTGTCATCTTCACC
ACCATCCTCATGAACAATGATGTCTCATCTACCTCTTTTCCCTCCTCAAAAACGACTTTTCTTAGGCAACATATTAAGAAAAAAAA
CTAAAAAAAAGCAGACACAAAAGTCATAAACACACAACGGCACACCATTGGGTAATGGCGTTGTAATTATTTGATAGAGAGACTCG
ATAAGTCAAACGTTGTCCGTTGACTGATGGAGCAGTGGAGCTGTGATGGACGACTTGATGGAGCCGCGAGAAACGGGTGCACGCTC
GATAACATGCTCCGCGGAGGACTGGATCATTGCCTTCTCAAGAGCTGCAAACTTCCTCTCTTCGCTCTTACCATACAACACAAAGT
AGAGTCCCGCTATGATCAGCACAGCTCCAATAATCCCTCCCAAGTAAAACTCTTCGCCTAACGCAATCGAAGCCATAATCGCAACG
ACCAAAGTCTGAACAGGTTGGTAAACCGCAACGAAAACTGGACCCCCTCTGTCAATACACCAAATCTGAACCGCAAACGCGATTCC
AGACGCCACTATTCCTGCGTAGAGGATGGTGAAAAGCTCCCAACCGGAGTGAAAAACCCAAGCCTGAGAATCTCTTTCACAGAAAG
CAGCGATGATCACGAACTGGATAATTCCGAACAAAAGGGTGTAAGACGTAACCGAGAGCCTGGCCGGATAAGATTTAAGAACCGGA
GCTTGAAAAACGAGCCAGCCAGACCACGAAAGACAGTGACCTATTAGGTAGATGCAGCCAAGAGTCCAGTTTTTCGGCGCGGCGTC
TCCAAGAGGCGCTAGTACGGCGGGGTTGGTTGTGAGGAGGTGAGTGTGGAGGTGGCTAGTCGGAGTGTAGATGGTGGGACCCTTGT
AGAGAGTGATGACGGAAGCTCCGGCGACGCAAAGAGCTGTTCCTAAGACTTTGGAGATACCGTCTCTTCTGTTTATTCTAACTTTC
TCAATCCTGAGAAGAGCAGCCATGAGAAAGGTAATGGCGGGAACAGAGTTTTGCATGGAAGAAGCAAATGTTGGTGAAGTGTAGTC
CAGTCCCAACAAGTAAAAGCCTTGGTTCGCTGTTATTCCGATGAGTGCCAGAAAGAAGAACTGAATGAGAAAATTGAGTGTAATCG
CTGGTCTCTCCTTCTTTTCAAGGAAGTAAGCGAAGGGAAGGAGAAGAAGCAAGGCAATGATGTTACGATAAACAGGGAAGACGAGT
TTGCTGATTCCCATGTTAAGAGCAGCTCTCGAGACCACATGGAATCCAGCGTAACCGAACTGCAACGTGAGCATCGCTATGTGAAG
CTGAAGCTTCTCCGGAACTCCCCATATCGCTCTCCGGTTATCGGTGTTATCAGCCATTGGAACTGACTTTTGAATCAGACGACGAT
GGAGAAGGAATGAGTGTGTTTGATTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889028 nodulin MtN21 family protein [Arabidopsis lyrata subsp. lyrata] | 1913 | 7e-212 |
| NP_565111 protein walls are thin 1 [Arabidopsis thaliana] | 1912 | 9e-212 |
| XP_002307691 mtn21-like protein [Populus trichocarpa] | 1537 | 3e-168 |
| ABK93004 unknown [Populus trichocarpa] | 1530 | 2e-167 |
| XP_002510467 Auxin-induced protein 5NG4, putative [Ricinus communis] | 1519 | 3e-166 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6J163 Auxin-induced protein 5NG4 | 1185 | 8e-129 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94AP3 Nodulin-like protein | 1912 | 6e-212 |
| A9PAE8 Mtn21-like protein | 1537 | 2e-168 |
| A9P9F1 Putative uncharacterized protein | 1530 | 1e-167 |
| B9R824 Auxin-induced protein 5NG4, putative | 1519 | 2e-166 |
| A9PD22 Predicted protein | 1513 | 1e-165 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G75500.1 nodulin MtN21 family protein | 1913 | 3e-214 |
| AT3G53210.1 nodulin MtN21 family protein | 1052 | 2e-114 |
| AT3G45870.1 integral membrane family protein / nodulin MtN21-related | 648 | 1e-067 |
| AT5G07050.1 LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT2G40900.1); Has 2288 Blast hits to 2270 proteins in 280 species: Archae - 23; Bacteria - 774; Metazoa - 5; Fungi - 0; Plants - 641; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink). | 647 | 2e-067 |
| AT2G39510.1 nodulin MtN21 family protein | 636 | 3e-066 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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