RadishBase

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Information for unigene UN20308

FASTA Sequence

Unigene ID: UN20308	Length: 1168		SNP
CGGGGGATGCAAGCATCTCATAGTCTGTTTATGTTGCTACTTCTCCTGCGTATCTGAGTACACTTGGCAAACCAGGAACGAAACAA ATTGGATGTCATTACATTCTAACTGGTTAGAAACTATTCCACGCCAGCCTCTGTGGTTCTTTATAAAGATTCTCACTCTCTCCCTC TACGGATATAAAATCCTCACTTTCGATTATTCGTTTCCTCACATCTTAAGAGAGAAGGCAAGAGGTGGCCTCATGGCAACTTTGAT CTCCGGAGCTATGCTTAGTGGATTGGGTTCTACTGTCTCGATCAGCAGGAGAAGCAGCGTCGGCCGTATAGATATGAGAGTTGGCT GGAAGAATGTGATCATTTCACCTCAGCGCAAGAAGTCGTGGGTCATGGCCGCCGTGAAAGATGATGATGGCAACTCAAAGCTAGAT CCAAAATGGCTCGATGATGCCTCAGAGAAAGCTTCCGAGTACGTGAAGGAGAAAGGAAGCGAAGTTGGACACTTGACTGCACATGA AGGACAAGAGGTTTTAGATCACATACAAAGAGCAAAACACTACTTTATGGAGAAAGCTGGTGTAGCCATGGACATGGTGACTGAAA ATGCTCACACAGCTTCAGATTTTGTGGCGGAAAAAGCCAAAGTGATGGAGGAAGAAGCTGTTTCAATTACAGAAAAAGCCAAAGAT TTCGTAGTTGAAAAAACAGGTGAAGCTAAAGATTTCATCATCGAAAAAGCTGGTGAAGCCAAAGAGTTGGCGACGGATATGAGCAA AAAAACGGCTATATACATTGGAGAGAAAGCAGCCGAGGCAAAAGAAGCGATATTGCCTCCAAATTCTGAAGAATAGATTGTATTTG TTTAGAGCCCTAACGTCTAAACAAATACAAGGTGTTGATATACAAAACATACTTTTTATCACGTGAGAATATAAAAAAAACTGTTA TAATCAGTGGTTTATCTTTTACTGAAAATTTTAATTCGAATATATTTGCAAAATAAGCCATACACAGTTATTTTCAGTTTTGATAT AACTGAAATATGTGTTGGTCGTTCCCGATTCTCAGATGTATATTGGAACCCTATACATATAAATCAATTTGAGGCAGTAATGTATT TTATTTTTATTTTGTGAGAATATATTGATACATAAACTTGGTGGTTTGTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002875233 hypothetical protein ARALYDRAFT_484297 [Arabidopsis lyrata subsp. lyrata]	488	8e-047
NP_565306 late embryogenesis abundant domain-containing protein [Arabidopsis thaliana]	484	2e-046
NP_178469 late embryogenesis abundant domain-containing protein [Arabidopsis thaliana]	476	2e-045
ABK28482 unknown [Arabidopsis thaliana]	476	2e-045
XP_002876894 late embryogenesis abundant domain-containing protein [Arabidopsis lyrata subsp. lyrata]	464	5e-044

Swiss-Prot top hits (Blast detail)	Score	e value
P20075 Embryonic protein DC-8	173	1e-011

TrEMBL top hits (Blast detail)	Score	e value
Q9SI55 At2g03850	484	2e-046
A0MEI5 Putative uncharacterized protein (Fragment)	476	1e-045
Q9ZPQ7 At2g03740	476	1e-045
Q06431 BP8 protein	185	8e-012
B8X355 LEA protein group 3	171	3e-010

Arabidopsis top hits (Blast detail)	Score	e value
AT2G03850.1 late embryogenesis abundant domain-containing protein / LEA domain-containing protein	484	9e-049
AT2G03740.1 late embryogenesis abundant domain-containing protein / LEA domain-containing protein	476	8e-048
AT2G36640.1 ATECP63 (EMBRYONIC CELL PROTEIN 63)	168	4e-012
AT3G53040.1 late embryogenesis abundant protein, putative / LEA protein, putative	163	1e-011
AT2G18340.1 late embryogenesis abundant domain-containing protein / LEA domain-containing protein	152	3e-010

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	15			21%


12	14			20%


6	13			18%


9	16			23%


11	9			13%


7	1			1%


10	2			3%


18	1			1%

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